View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21474_low_3 (Length: 312)
Name: NF21474_low_3
Description: NF21474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21474_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 95 - 298
Target Start/End: Original strand, 6111446 - 6111649
Alignment:
| Q |
95 |
aattgtgtgggttatacatgttaaatggctctactgttttttgcaatgcatctaaaacaaggcaaaacatgcatgataattatgagatatatggttttta |
194 |
Q |
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| T |
6111446 |
aattgtgtgggttatacatgttaaatggctctactgttttttgcaatgcatctaaaacaaggcaaaacatgcatgataattatgagatatatggttttta |
6111545 |
T |
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| Q |
195 |
tttgttgcatgttggtgacatgggtttagttagacttgatgaactaggttttctaggtgatcgaactggaaatgttataaacagacatcagccttgaaag |
294 |
Q |
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| T |
6111546 |
tttgttgcatgttggtgacatgggtttagttggacttgatgaactaggttttctaggtgatcgaactggaaatgttataaacagacatcagccttgaaag |
6111645 |
T |
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| Q |
295 |
gcaa |
298 |
Q |
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|||| |
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| T |
6111646 |
gcaa |
6111649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 6082208 - 6081997
Alignment:
| Q |
3 |
aagaatgtatcgtgagttagaatatgacactaatattgagcatgggataatggaaactc---tgcgtaatgcaaagaaaataagtagaggttccaaattg |
99 |
Q |
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| T |
6082208 |
aagaatgtatgatgagttaggctatgaaattagtattgagcatgagataatggaaactcctctgcgtaatgcaaagataataagtagaggttccaaattg |
6082109 |
T |
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| Q |
100 |
tgtgggttatacatgttaaatggctctactgttttttgcaatgcatctaaaacaaggcaaaacatgcatgataattatgagatatatggtttttatttgt |
199 |
Q |
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| T |
6082108 |
tgtgggttatacatgttaaatggctctactattttttggcatgcatataaaacaagacaaaacatacatgataattatgagaaatgccgtttttatttgt |
6082009 |
T |
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| Q |
200 |
tgcatgttggtg |
211 |
Q |
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| T |
6082008 |
tgcatgttggtg |
6081997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 6109875 - 6109971
Alignment:
| Q |
3 |
aagaatgtatcgtgagttagaatatgacactaatattgagcatgggataatggaaactctgcgtaatgcaaagaaaataagtagaggttccaaattgt |
100 |
Q |
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| T |
6109875 |
aagaatgtatcgtgagttagaatatgacaccaatattgagcatgg-ataatggaaactctgtgtaatgcaaagaaaataagtagaggttccaaattgt |
6109971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 191 - 302
Target Start/End: Original strand, 6118742 - 6118858
Alignment:
| Q |
191 |
tttatttgttgcatgttggtgacatgggtttagttagacttgatgaactaggttttctaggtgatc-----gaactggaaatgttataaacagacatcag |
285 |
Q |
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| T |
6118742 |
tttatttgttgcatgttggtgacatgggtttagttggacttgatgaacaaggttttttaggtgatcgaattgaactgaaaatattataaacagacatcag |
6118841 |
T |
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| Q |
286 |
ccttgaaaggcaatggt |
302 |
Q |
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| T |
6118842 |
ccttgaaaggcaatggt |
6118858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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