View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21475_high_10 (Length: 304)
Name: NF21475_high_10
Description: NF21475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21475_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 79 - 303
Target Start/End: Original strand, 7413385 - 7413609
Alignment:
| Q |
79 |
tttattttattcaaaacatcatcatcttctaactctttgttgtccttttgtgttattcaacgcagttagtaatccttttagttgcctaatctctcattcc |
178 |
Q |
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| T |
7413385 |
tttattttatccaaaacatcatcatcttctaactctttgttgtccctttgtgttattcaacgcagttagtaatccttttagttgcctaatctcccattcc |
7413484 |
T |
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| Q |
179 |
aacttttgtttcatatcagttgtcttacaagcttaataaattcaacatggagctgttctttttctctctgtataaattgatattcaaatgacataaatat |
278 |
Q |
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| T |
7413485 |
aacttttgtttcatatcagttgtcttacaagcttaatgaattcaacatggagctgttctttttctctctgtataaattgatattcaaatgacataaatac |
7413584 |
T |
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| Q |
279 |
tatgctatcttaacctaacaaacat |
303 |
Q |
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| T |
7413585 |
tatgctatcttaacctaacaaacat |
7413609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 7413379 - 7413080
Alignment:
| Q |
10 |
atcatttggttcaactcttcgcatgcttgaaggaactcttgcttttccttcaattccatctgcaagtactttattttattcaaaa-catcatcatcttct |
108 |
Q |
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| T |
7413379 |
atcatttggttcaggccctcgcaggcttgaagtaactcttccttttctttcaattccatctgcaaagaatttattttatccaaaaacttcatcatcttct |
7413280 |
T |
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| Q |
109 |
aactctttgttgtccttttgtgttattcaacgcagttagtaatccttttagttgcctaatctctcattccaacttttgtttcatat-cagttgtcttaca |
207 |
Q |
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| T |
7413279 |
aaatctttcttgtccctt-gtgttattcaacgcagttagtgatccttttagttgcccaatcactcattcaaacttttgtttcatatccagttgtcttaca |
7413181 |
T |
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| Q |
208 |
agcttaataaattcaacatggagctgttctttt---tctctctgtataaattgatattcaaatgacataaatattatgct-atcttaacctaacaaacat |
303 |
Q |
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| T |
7413180 |
agcttaacgaattcaacatggagctattcttttttctctctttgtataaattgatattcaaatggcataaatactatgctaattttaacctaacaaacat |
7413081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 302
Target Start/End: Complemental strand, 30495734 - 30495558
Alignment:
| Q |
131 |
ttattcaacgcagttagtaatccttttagttgcctaatctctcattccaacttttgtttcatat-cagttgtcttacaagcttaataaattcaacatgga |
229 |
Q |
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| T |
30495734 |
ttattcaacacaattagtgatccttttagttgcccaatctcccattccaacttttgtttcatatccagttgtcttacaagcttaacgaattcaacatgaa |
30495635 |
T |
|
| Q |
230 |
gctgttc-tttttctctctg--tataaattgatattcaaatgacataaatattatgctatc-ttaacctaacaaaca |
302 |
Q |
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| T |
30495634 |
gttgttcttttttctccctgtatataaattgatatttgaatgacataaatactatgctaacgttgacctaacaaaca |
30495558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 265
Target Start/End: Complemental strand, 30447068 - 30446936
Alignment:
| Q |
134 |
ttcaacgcagttagtaatccttttagttgcctaatctctcattccaacttttgtttcatatc-agttgtcttacaagcttaataaattcaacatggagct |
232 |
Q |
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|||||| || ||||| |||||||||||||| |||||| ||||| ||||||||||||||| ||||||||| |||||| ||| | || | ||||||||| |
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| T |
30447068 |
ttcaacacacttagtgatccttttagttgctgaatctccagttccagcttttgtttcatatccagttgtctttcaagctgaatgattttagcatggagct |
30446969 |
T |
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| Q |
233 |
gttctttttctctctgtataaattgatattcaa |
265 |
Q |
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| T |
30446968 |
gttctttttgtttctgtataaatagaaattcaa |
30446936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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