View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21475_high_3 (Length: 400)
Name: NF21475_high_3
Description: NF21475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21475_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 115 - 386
Target Start/End: Complemental strand, 23105664 - 23105393
Alignment:
| Q |
115 |
agatgatataagtaaaatttatcattaaatatctccatgctattcacaaacaaccaaatataacaccaattttataatatatttaacactcttgtaagca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23105664 |
agatgatataagtaaaatttatcattaaatatctccatgctattcacaaacaaccaaatataacaccaattttataatatatttaacactcttgtaagca |
23105565 |
T |
|
| Q |
215 |
tatcacggaaattaaaagatcaaagatgtgagaaaatttataatagtaaaaacattacagtgacaaagaaaatgaaaggtttagacataatgaagaaata |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23105564 |
tatcacggaaattaaaagatcaaagatgtgagaaaatttataatagtaaaaacattacagtgacaaagaaaatgaaaggtttagacataatgaagaaata |
23105465 |
T |
|
| Q |
315 |
ttgtttgacttaactagtgaacacatatgcattcatcctcaacacacttgactactgtttcaaggggacaca |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23105464 |
ttgtttgacttaactagtgaacacatatgcattcatcctcaacacacttgactactgtttcaaggggacaca |
23105393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University