View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21475_high_4 (Length: 350)

Name: NF21475_high_4
Description: NF21475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21475_high_4
NF21475_high_4
[»] chr2 (12 HSPs)
chr2 (11-350)||(20927357-20927696)
chr2 (13-202)||(9829344-9829533)
chr2 (63-203)||(8277182-8277322)
chr2 (206-350)||(20934741-20934885)
chr2 (206-346)||(20953283-20953423)
chr2 (63-176)||(22787801-22787914)
chr2 (63-194)||(35000444-35000575)
chr2 (63-192)||(11573851-11573987)
chr2 (70-206)||(31133335-31133471)
chr2 (61-200)||(19987720-19987861)
chr2 (128-200)||(12892382-12892454)
chr2 (21-131)||(20500422-20500534)
[»] chr3 (13 HSPs)
chr3 (13-206)||(54335604-54335797)
chr3 (21-206)||(30933791-30933976)
chr3 (21-206)||(11916888-11917073)
chr3 (13-206)||(20518045-20518238)
chr3 (29-206)||(53767190-53767367)
chr3 (21-203)||(30528455-30528637)
chr3 (29-187)||(14443735-14443893)
chr3 (63-192)||(7666699-7666828)
chr3 (63-203)||(19866950-19867091)
chr3 (80-204)||(39649703-39649827)
chr3 (63-192)||(35995304-35995433)
chr3 (63-160)||(34086603-34086700)
chr3 (63-193)||(35063134-35063263)
[»] chr1 (16 HSPs)
chr1 (21-206)||(23941593-23941778)
chr1 (21-206)||(16315123-16315308)
chr1 (11-206)||(12063508-12063703)
chr1 (11-206)||(30704303-30704498)
chr1 (63-206)||(3368237-3368380)
chr1 (63-192)||(48025756-48025884)
chr1 (63-192)||(25817616-25817745)
chr1 (63-192)||(33402876-33403005)
chr1 (63-192)||(35577256-35577385)
chr1 (127-204)||(18426363-18426440)
chr1 (206-346)||(3349676-3349816)
chr1 (213-340)||(4322720-4322847)
chr1 (206-350)||(2006738-2006882)
chr1 (206-340)||(4334603-4334737)
chr1 (206-350)||(2948064-2948208)
chr1 (262-350)||(3341401-3341489)
[»] chr7 (12 HSPs)
chr7 (21-206)||(23941301-23941486)
chr7 (45-203)||(44221991-44222149)
chr7 (21-206)||(11356297-11356482)
chr7 (16-206)||(4278555-4278746)
chr7 (63-205)||(2369655-2369797)
chr7 (63-189)||(4452395-4452521)
chr7 (24-206)||(13070446-13070618)
chr7 (25-206)||(12868575-12868757)
chr7 (63-149)||(4452757-4452843)
chr7 (50-176)||(31730894-31731021)
chr7 (130-206)||(23562286-23562362)
chr7 (142-200)||(2834739-2834797)
[»] scaffold0599 (1 HSPs)
scaffold0599 (21-206)||(8639-8824)
[»] chr5 (15 HSPs)
chr5 (21-206)||(29195823-29196008)
chr5 (13-206)||(32910535-32910728)
chr5 (22-206)||(15235035-15235222)
chr5 (11-195)||(20887674-20887858)
chr5 (63-192)||(30491525-30491655)
chr5 (63-192)||(38739554-38739682)
chr5 (63-203)||(34017398-34017538)
chr5 (63-192)||(763115-763243)
chr5 (60-203)||(5504930-5505069)
chr5 (21-145)||(35050308-35050432)
chr5 (63-158)||(33143948-33144043)
chr5 (63-148)||(16109319-16109403)
chr5 (58-151)||(8736460-8736555)
chr5 (126-200)||(23276021-23276095)
chr5 (206-350)||(17970148-17970292)
[»] chr4 (18 HSPs)
chr4 (21-206)||(50008793-50008978)
chr4 (21-206)||(50336188-50336373)
chr4 (57-191)||(22182152-22182286)
chr4 (21-206)||(33990720-33990905)
chr4 (21-206)||(43209986-43210171)
chr4 (30-206)||(41418878-41419054)
chr4 (63-192)||(24972607-24972736)
chr4 (21-185)||(1938538-1938702)
chr4 (21-160)||(156888-157027)
chr4 (21-206)||(12656473-12656665)
chr4 (63-192)||(23283379-23283508)
chr4 (63-189)||(36499124-36499250)
chr4 (63-178)||(55523943-55524058)
chr4 (63-170)||(12586403-12586510)
chr4 (67-206)||(45246749-45246888)
chr4 (21-98)||(5534180-5534257)
chr4 (61-174)||(6599370-6599486)
chr4 (126-198)||(24904254-24904326)
[»] chr8 (13 HSPs)
chr8 (24-206)||(13868174-13868358)
chr8 (45-206)||(32075008-32075168)
chr8 (21-206)||(24626034-24626214)
chr8 (21-206)||(2807153-2807338)
chr8 (13-117)||(20534367-20534471)
chr8 (58-206)||(14189775-14189925)
chr8 (113-206)||(20532087-20532180)
chr8 (13-102)||(22661849-22661938)
chr8 (71-192)||(34276417-34276538)
chr8 (21-134)||(41601078-41601191)
chr8 (59-206)||(27188174-27188323)
chr8 (134-206)||(22661933-22662005)
chr8 (63-99)||(33228335-33228371)
[»] scaffold1050 (1 HSPs)
scaffold1050 (13-206)||(2011-2205)
[»] chr6 (8 HSPs)
chr6 (63-192)||(31522355-31522484)
chr6 (57-195)||(13543661-13543798)
chr6 (63-192)||(32275553-32275682)
chr6 (24-170)||(8518467-8518615)
chr6 (92-134)||(4321590-4321632)
chr6 (58-97)||(7452450-7452489)
chr6 (146-195)||(7452361-7452410)
chr6 (152-204)||(4321528-4321580)
[»] scaffold0037 (1 HSPs)
scaffold0037 (63-178)||(38133-38248)
[»] scaffold1063 (1 HSPs)
scaffold1063 (63-192)||(1643-1772)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 20927696 - 20927357
Alignment:
Q  11 cacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttagg 110  Q
    ||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20927696 cacagagttactgtttttgtacaaagcccaccagtccatactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttagg 20927597  T
Q  111 tcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcataatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20927596 tcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgtatcatctaaactcataatt 20927497  T
Q  211 ggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatcaacttc 310  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20927496 ggaaagtattttcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatcaacttc 20927397  T
Q  311 tgtgaatttaaatttttcaagcagggggcagccagatatc 350  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20927396 tgtgaatttaaatttttcaagcagggggcagccagatatc 20927357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 9829533 - 9829344
Alignment:
Q  13 cagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtc 112  Q
    ||||||| ||||||| ||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| || |||| ||||    
T  9829533 cagagttactgttttcgtacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaactcaaaaagtgcgaatttttgggtc 9829434  T
Q  113 aaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaac 202  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| | ||||||| ||||    
T  9829433 aaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcatgtattatatcatcaaaac 9829344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 8277322 - 8277182
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| ||||||||  |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  8277322 ttttctttccctccacctccaaaaacctcaaaaatgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 8277223  T
Q  163 ctcatcaagcatcaaatatcaggtaatgtatcatctaaact 203  Q
    ||||||||| |||||| | ||||||||||||| || |||||    
T  8277222 ctcatcaagtatcaaagaacaggtaatgtatcgtcaaaact 8277182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 206 - 350
Target Start/End: Complemental strand, 20934885 - 20934741
Alignment:
Q  206 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 305  Q
    |||||||||||| |||| |||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||| ||||| || ||||| ||||||| ||    
T  20934885 taattggaaagtgttgttaaagttaataccctcatattcgccatggatttccaaaaacttgagatttggtgcacagatatcaatttgggcgaagccacca 20934786  T
Q  306 acttctgtgaatttaaatttttcaagcagggggcagccagatatc 350  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||    
T  20934785 acttcggtcaatttcaatttttcaagcagggggcagccagatatc 20934741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 206 - 346
Target Start/End: Complemental strand, 20953423 - 20953283
Alignment:
Q  206 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 305  Q
    |||||| ||||| ||||| ||||||||| |||||||||| ||||  |||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  20953423 taattgaaaagtgttgtcgaagttaataccctcatattcgccatcaatttccaaaaacttgagatttggtgcacgaatattaatttgggtgaaaccatca 20953324  T
Q  306 acttctgtgaatttaaatttttcaagcagggggcagccaga 346  Q
    |||||| | ||||| |||||||||||||| |||||||||||    
T  20953323 acttctatcaatttcaatttttcaagcagagggcagccaga 20953283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 22787914 - 22787801
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| |||||||||| ||||||| || |||| ||||||||||||||||| ||||||||||||||||||| |||| ||||||||| |    
T  22787914 ttttctttccctccacctccaaaaacccataaagtgcgaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcatgaagtaagtttctacg 22787815  T
Q  163 ctcatcaagcatca 176  Q
    ||||||||||||||    
T  22787814 ctcatcaagcatca 22787801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 35000444 - 35000575
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||| |||||||  ||||||||||||||||| || |||| ||||||||||||| |||||||||||||||||||| |||||||||||| | ||      
T  35000444 ttttctttccttccacctctaaaaacccaaaaagtgcgaacttttgggtcaaaatcttcgttccaaatcattgcaaatcgccaggaagcaagtctataca 35000543  T
Q  163 ctcatcaagcatcaaatatcaggtaatgtatc 194  Q
    |||||||||||||||| | |||||||||||||    
T  35000544 ctcatcaagcatcaaagaacaggtaatgtatc 35000575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 11573851 - 11573987
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaa-------aattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagt 155  Q
    |||||||||||||||||| ||||||||| |||||||| |       |||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  11573851 ttttctttccctccacctccaaaaaccccaaaagtgcgatgtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagt 11573950  T
Q  156 ttctaggctcatcaagcatcaaatatcaggtaatgta 192  Q
    ||||| ||||||||||||||||| | |||||||||||    
T  11573951 ttctatgctcatcaagcatcaaagaacaggtaatgta 11573987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 31133335 - 31133471
Alignment:
Q  70 tccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatca 169  Q
    ||||||||||| |||||||||||||||||  || |||| |||||||||||||||||||||| |||||||||||| |  || |||||||||| | ||||||    
T  31133335 tccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattccaaattattgcaaatcgttataaaacaagtttctatgttcatca 31133434  T
Q  170 agcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||||||||| | ||||||||||| | || ||||||||    
T  31133435 agcatcaaagaacaggtaatgtaccgtcaaaactcat 31133471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 200
Target Start/End: Original strand, 19987720 - 19987861
Alignment:
Q  61 cattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttc 158  Q
    |||||||||||||||  ||||||||||||| |||||||||  ||| ||| |  ||||||||| |    ||||||| |||||| |||||||||||||||||    
T  19987720 cattttctttccctcttcaccttcaaaaactcaaaaagtgggaaaatttggagcaaaatcttgagctgaaatcatcgcaaattgtcaggaagcaagtttc 19987819  T
Q  159 taggctcatcaagcatcaaatatcaggtaatgtatcatctaa 200  Q
    || |||||| || | | ||| || ||||||||||||||||||    
T  19987820 tacgctcatgaaacgtaaaaaattaggtaatgtatcatctaa 19987861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 12892454 - 12892382
Alignment:
Q  128 aatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 200  Q
    |||||||| ||||||||| |||| ||||||||| ||| ||||| | | ||| |||||||||||||||||||||    
T  12892454 aatcattggaaatcgtcatgaagtaagtttctatgctaatcaaacgttaaaaatcaggtaatgtatcatctaa 12892382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 20500422 - 20500534
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatc 118  Q
    ||||||||||| ||| || |||  |||||||| || || ||||||||||||||||  ||| | |||||  ||||||||||| |  |||| ||||||||||    
T  20500422 ctgtttttgtataaaacctatcattccatactgcaagctccattttctttccctcttcacttccaaaattccaaaaagtgcgattttttgggtcaaaatc 20500521  T
Q  119 ttcattccaaatc 131  Q
    |||||| ||||||    
T  20500522 ttcatttcaaatc 20500534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 54335604 - 54335797
Alignment:
Q  13 cagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtc 112  Q
    ||||||| ||||||||||||||| | |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  54335604 cagagttactgtttttgtacaaaactcatcagtccatacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaatttttgggtc 54335703  T
Q  113 aaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  54335704 aaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 54335797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 30933976 - 30933791
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| | |||  ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| |    
T  30933976 ctgttttcgtacaaaactcattagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaatcct 30933877  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  30933876 catcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 30933791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 11916888 - 11917073
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| |||| | |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| |    
T  11916888 ctgttttcgtacaaaacccagcagtccatactccaagcaccattttttttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcct 11916987  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  11916988 catcccaaatctttgcaaatcgtcaggaagcaagtttctacgctcatcaagcacaaaatatcaggtattgtatcatcaaaactcat 11917073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 20518238 - 20518045
Alignment:
Q  13 cagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtc 112  Q
    |||||||  |||||| ||||||| |||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||    
T  20518238 cagagttaatgttttcgtacaaaacccataagtccatactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtc 20518139  T
Q  113 aaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||| |||| ||||| ||||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  20518138 aaaatcctcatcccaaagcattgtaaatcgtcatgaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 20518045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 53767190 - 53767367
Alignment:
Q  29 gtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaa 128  Q
    ||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||  |||| ||||    
T  53767190 gtacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgtaattttttgggtcaaaattctcatcccaa 53767289  T
Q  129 atcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  53767290 atcattgcaaatcgtcatgaagcaagtttctacgctcatcaagcaccaaatatcatgtattgtatcatcaaaactcat 53767367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 30528455 - 30528637
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    |||||||||||||||  |||||  |||||||||||  | ||||||||||||||||||||| |||||||||||||||||| |  |||| | ||||||||||    
T  30528455 ctgtttttgtacaaaatccatcaatccatactccaatcgccattttctttccctccacctccaaaaacccaaaaagtgcgattttttggatcaaaatctt 30528554  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 203  Q
    ||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||| ||||| |||||||||||||    
T  30528555 cattctaaatcattgcaaatcgtcaggaagcaagtttctatactcatcaaacatcaaatatcatgtaatctatcatctaaact 30528637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 14443893 - 14443735
Alignment:
Q  29 gtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaa 128  Q
    ||||||| ||||||  |||| |||||| |||||||||||||||||||||||| |||||||||||||||||| |  |||| |||||||||| |||| ||||    
T  14443893 gtacaaaacccatcattccaaactccaagcaccattttctttccctccacctccaaaaacccaaaaagtgcgattttttcggtcaaaatcctcatcccaa 14443794  T
Q  129 atcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggta 187  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||  ||||||||    
T  14443793 atcattgcaaatcgtcaggaagtaagtttctacgctcatcaagcaccaatgatcaggta 14443735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 7666828 - 7666699
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| ||  ||||||||||||||||||||||||||||| |||||||  ||||||||| |    
T  7666828 ttttctttccctccacctccaaaaacccaaaaagtgcgaaatttttgggtaaaatcttcattccaaatcattgcaaatcatcaggaaataagtttctacg 7666729  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    |||||||||||||||| | || ||||||||    
T  7666728 ctcatcaagcatcaaagaacatgtaatgta 7666699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 19866950 - 19867091
Alignment:
Q  63 ttttctttccctccaccttcaaaaacc-caaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctag 161  Q
    |||||||||||||||||| |||||||| | |||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||||| ||||||||||     
T  19866950 ttttctttccctccacctccaaaaacctccaaaagtgcgaaattttgggtgaaaatcttcattccaaatcattgtaaattgtcaggaaacaagtttctac 19867049  T
Q  162 gctcatcaagcatcaaatatcaggtaatgtatcatctaaact 203  Q
    ||||||||||||||||| | ||||||||||||| || |||||    
T  19867050 gctcatcaagcatcaaagaacaggtaatgtatcgtcaaaact 19867091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 39649827 - 39649703
Alignment:
Q  80 ttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaat 179  Q
    ||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||     
T  39649827 ttcaaaaactccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaag 39649728  T
Q  180 atcaggtaatgtatcatctaaactc 204  Q
    |  |||||||||| |||| ||||||    
T  39649727 aataggtaatgtaccatcaaaactc 39649703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 35995304 - 35995433
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| ||||||||| |||||||  || |||| ||| ||| | || |||||||||||||||||||||||||||| |||||||||| |    
T  35995304 ttttctttccctccacctccaaaaaccccaaaagtgtgaatttttgggtaaaattttttattccaaatcattgcaaatcgtcaggaaacaagtttctacg 35995403  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    |||||||||||||||| | |||||||||||    
T  35995404 ctcatcaagcatcaaagaacaggtaatgta 35995433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 34086700 - 34086603
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttcta 160  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||  |||||||||    
T  34086700 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaataagtttcta 34086603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 35063134 - 35063263
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| |||||| || |||||||| ||||||| ||| |||||||| | |||||||||||||||||||||| ||| |||||||||| |    
T  35063134 ttttctttccctccacctccaaaaatcccaaaagtgcgaaattttgggtaaaaatctttaatccaaatcattgcaaatcgtca-gaaacaagtttctacg 35063232  T
Q  163 ctcatcaagcatcaaatatcaggtaatgtat 193  Q
    ||||||||| |||||| |  |||||||||||    
T  35063233 ctcatcaagtatcaaagaataggtaatgtat 35063263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 23941593 - 23941778
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||| | |    
T  23941593 ctgtttttgtacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaaccct 23941692  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| ||||||||    
T  23941693 catcccaaatcattgcaaatcgtcaggaagcaagtttctacgttcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 23941778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 16315308 - 16315123
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| |||||| ||||| ||||||  |||||||||||||||||||||||||| ||||||||||||||| |  |||| | ||||||||||    
T  16315308 ctgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatctt 16315209  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||| ||||||||    
T  16315208 catcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatataaggtattgtatcatcaaaactcat 16315123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 12063508 - 12063703
Alignment:
Q  11 cacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttagg 110  Q
    ||||| ||| ||||||| ||||||| |||||| ||||| |||||| |||||||||||||||||||  |||||||||||||||||||||  |  |||| ||    
T  12063508 cacagtgttactgttttcgtacaaaacccatcagtccaaactccaagcaccattttctttccctcttccttcaaaaacccaaaaagtgtgattttttggg 12063607  T
Q  111 tcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||| ||||||||| ||||||||    
T  12063608 tcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacactcatcaagcactaaatatcaggtattgtatcatcaaaactcat 12063703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 30704498 - 30704303
Alignment:
Q  11 cacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttagg 110  Q
    ||||| ||| ||||||| ||||||| | |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||| ||    
T  30704498 cacagtgttactgttttcgtacaaaactcatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgactttttggg 30704399  T
Q  111 tcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||||  ||||  |||||||||||||||||||||||||||||||||||  ||||| || || |||||||||| || ||||||||| ||||||||    
T  30704398 tcaaaattctcatctcaaatcattgcaaatcgtcaggaagcaagtttctacactcattaaacaccaaatatcagatattgtatcatcaaaactcat 30704303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 3368237 - 3368380
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| |||||||||||||||||| |   ||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||      
T  3368237 ttttctttccctccacctccaaaaacccaaaaagtgcgattatttgggtcaaaatcttcattcataatcattgcaaatcatcaggaagcaagtttctaca 3368336  T
Q  163 ctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    || ||||||||||||| |||| ||||||||||||| ||||||||    
T  3368337 cttatcaagcatcaaacatcaagtaatgtatcatcaaaactcat 3368380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 48025756 - 48025884
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| ||||| ||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||| ||| ||| |||||||||| |    
T  48025756 ttttctttccctccacctccaaaaccccaaaa-gtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcatcaagaaacaagtttctatg 48025854  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    |||||||||||||||| | |||||||||||    
T  48025855 ctcatcaagcatcaaagaacaggtaatgta 48025884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 25817616 - 25817745
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| |||||||||||||||||  || |||| ||||||||||||| |||||||||||||||||||||||  ||||||||||||  |    
T  25817616 ttttctttccctccacctccaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcgttccaaatcattgcaaatcgtcataaagcaagtttctgcg 25817715  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    ||| |||||||||| | | |||||||||||    
T  25817716 ctcgtcaagcatcatagaacaggtaatgta 25817745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 33403005 - 33402876
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    ||||||||| ||||||||  |||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| || |||| |||||||||| |    
T  33403005 ttttctttcgctccacctctaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcttccggaaacaagtttctacg 33402906  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    ||||| |||||||||| | |||||||||||    
T  33402905 ctcattaagcatcaaagaacaggtaatgta 33402876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 35577385 - 35577256
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||| | ||||||| ||||||||| |||||||| ||||||| ||| |||||  |||||||||||||||||||||||| ||||| |||||||||| |    
T  35577385 ttttcttttcgtccacctccaaaaaccccaaaagtgcgaaatttttggtaaaaatactcattccaaatcattgcaaatcgttaggaaacaagtttctacg 35577286  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    |||||||||||||||| | |||||||||||    
T  35577285 ctcatcaagcatcaaagaacaggtaatgta 35577256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 18426440 - 18426363
Alignment:
Q  127 aaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 204  Q
    |||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||    
T  18426440 aaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaaacgtcaaaaatcagataatgtatcatctaaactc 18426363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 206 - 346
Target Start/End: Complemental strand, 3349816 - 3349676
Alignment:
Q  206 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 305  Q
    |||||| ||||| |||||||||||||||  |||| ||||| | | |||||  |||||||||||| |||||||| |||||||||  ||||| || ||||||    
T  3349816 taattgaaaagtgttgtcaaagttaatactctcaaattcatcttcgatttcaaaaaacttgagacttggtgcatggatattaatatgggttaaaccatca 3349717  T
Q  306 acttctgtgaatttaaatttttcaagcagggggcagccaga 346  Q
    | || ||| ||| | ||| | ||||||||||||||||||||    
T  3349716 atttttgtcaatgtcaatctctcaagcagggggcagccaga 3349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 340
Target Start/End: Original strand, 4322720 - 4322847
Alignment:
Q  213 aaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatcaacttctg 312  Q
    ||||| ||||||||| ||||| ||||  ||  ||| | |||||  ||||||||||||||||||||| ||||||||| |||||| || |||||||||||||    
T  4322720 aaagtgttgtcaaaggtaataccctcgaatagaccttcgatttcaaaaaacttgagatttggtgcatggatattaatttgggttaaaccatcaacttctg 4322819  T
Q  313 tgaatttaaatttttcaagcagggggca 340  Q
    | ||||| |  |||||||||| ||||||    
T  4322820 tcaatttcatcttttcaagcaaggggca 4322847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 350
Target Start/End: Complemental strand, 2006882 - 2006738
Alignment:
Q  206 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 305  Q
    |||||||||||| ||||||||| ||||||||||| ||| ||||  ||| | ||||| ||| |||||||||||  | || || | ||||||||| ||||||    
T  2006882 taattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttaagatttggtgcgtgaatgtttatttgggtgaaaccatca 2006783  T
Q  306 acttctgtgaatttaaatttttcaagcagggggcagccagatatc 350  Q
    | |||||| ||| | || ||||||||||| ||||| | |||||||    
T  2006782 agttctgtcaatgtcaaattttcaagcagagggcaactagatatc 2006738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 340
Target Start/End: Original strand, 4334603 - 4334737
Alignment:
Q  206 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 305  Q
    |||||||||||| ||| ||||| ||| | ||||| ||||||||  |||||  ||||||||||||||||||||| | ||||||| ||| || || |||| |    
T  4334603 taattggaaagtgttgccaaaggtaacaacctcaaattcaccaacgatttcaaaaaacttgagatttggtgcatgaatattaatttgcgttaaaccataa 4334702  T
Q  306 acttctgtgaatttaaatttttcaagcagggggca 340  Q
    | |||| | ||| | || |||||||||| ||||||    
T  4334703 aattctctcaatctcaacttttcaagcaaggggca 4334737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 350
Target Start/End: Original strand, 2948064 - 2948208
Alignment:
Q  206 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 305  Q
    |||||| ||||| |||||||||||||||  |||| ||||| | | || ||  ||||||||||||||||||||| | |||||||  || || || ||||||    
T  2948064 taattgaaaagtgttgtcaaagttaatactctcaaattcatcgtcgacttcaaaaaacttgagatttggtgcatgaatattaatatgagttaaaccatca 2948163  T
Q  306 acttctgtgaatttaaatttttcaagcagggggcagccagatatc 350  Q
    | || ||  ||| | ||||| || |||| |||||||||| |||||    
T  2948164 atttttgccaatgtcaatttctctagcacggggcagccatatatc 2948208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 350
Target Start/End: Complemental strand, 3341489 - 3341401
Alignment:
Q  262 acttgagatttggtgcacggatattaacttgggtgaagccatcaacttctgtgaatttaaatttttcaagcagggggcagccagatatc 350  Q
    ||||||||||||||||| | |||||||  || || || ||||||| |||| | ||| | |||| |||||| |||||||||| |||||||    
T  3341489 acttgagatttggtgcatgaatattaatctgtgttaaaccatcaatttctttcaatgtcaattcttcaagtagggggcagctagatatc 3341401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 23941301 - 23941486
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| | |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |    
T  23941301 ctgttttcgtacaaaactcatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaattttttggtcaaaatcct 23941400  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  23941401 catcccaaatcattgcaaatcgtcatgaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 23941486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 44221991 - 44222149
Alignment:
Q  45 tccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtc 144  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |||| ||||||||||||||||||||    
T  44221991 tccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtc 44222090  T
Q  145 aggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 203  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  44222091 aggaagcaagtttctacgctcatcaagcatcaaatatcaggtattgtatcatcaaaact 44222149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 11356297 - 11356482
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| || |||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||  |    
T  11356297 ctgttttcgtgcaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaattct 11356396  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| ||||||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| ||||||||    
T  11356397 catcccaaatcattgcaaatcatcaggaagcaagtttctacgttcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 11356482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 4278555 - 4278746
Alignment:
Q  16 agttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaa 115  Q
    |||| ||||||| ||||||| |||||| ||| ||||||||  ||||||||||||||||||||||||||||||||| |||||||  || |||| |||||||    
T  4278555 agttactgttttcgtacaaaacccatcagtcgatactccaaacaccattttctttccctccaccttcaaaaaccccaaaagtgagaattttttggtcaaa 4278654  T
Q  116 atcttcattccaaatcattgcaaatcgtcagg-aagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| |||| ||||||||||||| ||||||||| ||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  4278655 atcctcatcccaaatcattgcacatcgtcaggaaagtaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatctaaactcat 4278746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 2369797 - 2369655
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    ||||||||||||||||||  ||||||||||||||||  || |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||      
T  2369797 ttttctttccctccacctctaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcattccaaatcattgcaaatcgtcatgaagcaagtttctaca 2369698  T
Q  163 ctcatcaagcatcaaatatcaggtaatgtatcatctaaactca 205  Q
    |||||||||||||||| | ||||||||||||| || |||||||    
T  2369697 ctcatcaagcatcaaagaacaggtaatgtatcctcaaaactca 2369655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 63 - 189
Target Start/End: Complemental strand, 4452521 - 4452395
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    ||||||||||||||| || |||||||||||||||||| || |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||      
T  4452521 ttttctttccctccatctccaaaaacccaaaaagtgcgaatttttgggtcaaaatcttcattccaaataattgcaaatcatcaggaagcaagtttctaca 4452422  T
Q  163 ctcatcaagcatcaaatatcaggtaat 189  Q
     ||||||||||||||| | ||||||||    
T  4452421 ttcatcaagcatcaaagaacaggtaat 4452395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 13070618 - 13070446
Alignment:
Q  24 tttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcat 123  Q
    |||||||| ||| |||| | ||||||| |||| |||||||||||||||||||||||| |||||||||||||||||  |  |||| |||||||||||||||    
T  13070618 tttttgtataaaacccagcagtccatattccaagcaccattttctttccctccacctccaaaaacccaaaaagtgtgattttttgggtcaaaatcttcat 13070519  T
Q  124 tccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||||||          ||| ||||||||||||||  | ||||||||||||||||||||  ||||||||||||||||||||    
T  13070518 tccaaatca----------tcatgaagcaagtttctacacccatcaagcatcaaatatcagacaatgtatcatctaaactcat 13070446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 12868575 - 12868757
Alignment:
Q  25 ttttgtacaaagcccatcggtccatactccatgcaccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaatttta-ggtcaaaatcttc 121  Q
    ||||||||||| ||||||  |||  ||||||  ||||||||||||||| ||  ||||| ||||||||||||| ||||||| ||||  |||||||||||||    
T  12868575 ttttgtacaaaacccatcaatcccaactccaa-caccattttctttccttcttcacctccaaaaacccaaaa-gtgcaaatttttttggtcaaaatcttc 12868672  T
Q  122 attccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| ||||||||| |||||||| |||||| |||||||||  |||||||||||| ||| ||||| ||||||||||||| |||||||    
T  12868673 atttcaaatcattacaaatcgtgaggaagtaagtttctacactcatcaagcataaaaaatcagataatgtatcatcttaactcat 12868757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 4452843 - 4452757
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaa 149  Q
    |||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||| |||||||||| |||||||    
T  4452843 ttttctttccctccacctccaaaaacctaaaaagtgcaaatttttgggtcaaaatcttcattccaaataattgcaaatcatcaggaa 4452757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 31730894 - 31731021
Alignment:
Q  50 actccatgcaccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcagg 147  Q
    |||||| |||||||||||||||||||  ||||| |||||||||||| ||||| || || | |||||| ||||||||| || |||||||||||||||||||    
T  31730894 actccaagcaccattttctttccctctccacctccaaaaacccaaagagtgcgaa-ttgtgggtcaatatcttcatttcatatcattgcaaatcgtcagg 31730992  T
Q  148 aagcaagtttctaggctcatcaagcatca 176  Q
    |||||||||||||  |||||||| |||||    
T  31730993 aagcaagtttctacactcatcaaacatca 31731021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 23562362 - 23562286
Alignment:
Q  130 tcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||||| |||||||| || ||||||||||||| ||||||||||||| ||| |||| |||||||||||| | |||||||    
T  23562362 tcatttcaaatcgttagaaagcaagtttctacgctcatcaagcattaaaaatcaagtaatgtatcattttaactcat 23562286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 2834739 - 2834797
Alignment:
Q  142 gtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 200  Q
    |||| |||||||||||||| ||||||||| | ||||| |||||||||||||||||||||    
T  2834739 gtcatgaagcaagtttctacgctcatcaaacgtcaaaaatcaggtaatgtatcatctaa 2834797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 8639 - 8824
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| |||| | |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| |    
T  8639 ctgttttcgtacaaaacccagcagtccatactccaagcaccattttttttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcct 8738  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  8739 catcccaaatctttgcaaatcgtcaggaagcaagtttctacgctcatcaagcacaaaatatcaggtattgtatcatcaaaactcat 8824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 29196008 - 29195823
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| |||||  ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||| |    
T  29196008 ctgttttcgtacaaaacccattagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaattttttaggtcaatatcct 29195909  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| |||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  29195908 catcccaaatcattgcaaatcgtcagaaagcaagtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 29195823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 32910535 - 32910728
Alignment:
Q  13 cagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtc 112  Q
    ||||||| ||||||| ||||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||    
T  32910535 cagagttactgttttcgtacaaaacccatcagtccatacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtc 32910634  T
Q  113 aaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||  |||| ||||| ||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  32910635 aaaattctcatcccaaaccattgcaaatcgtcatgaagcaagtttctacactcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 32910728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 15235222 - 15235035
Alignment:
Q  22 tgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctcc--accttcaaaaacccaaaaagtgcaaaattttagg-tcaaaatc 118  Q
    |||||||||||||| || ||| |||||||||||| |||||||||| ||||||||   |||| ||||||||||||||||||||  |||| || ||||||||    
T  15235222 tgtttttgtacaaaaccaatcagtccatactccaagcaccattttatttccctctcgacctccaaaaacccaaaaagtgcaatttttttgggtcaaaatc 15235123  T
Q  119 ttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||||||||||||||||||||||||| |||||||||  ||  ||||||||||||||||||||| ||||||||||||||||||||||    
T  15235122 ttcattccaaatcattgcaaatcgtcagaaagcaagttcatacactcatcaagcatcaaatatcaagtaatgtatcatctaaactcat 15235035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 20887858 - 20887674
Alignment:
Q  11 cacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttagg 110  Q
    ||||| ||| ||||||| ||||||| |||||| ||||| || ||| |||||||||||||||||| |||||||||||||||||||||||  |  ||||  |    
T  20887858 cacagtgttactgttttcgtacaaaacccatcagtccaaacaccaagcaccattttctttccctacaccttcaaaaacccaaaaagtgggattttttgag 20887759  T
Q  111 tcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatca 195  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||| |||||||    
T  20887758 tcaaaatcctcatcccaaatcattgcaaatcgtcaggaagaaagtttctacgcttatcaagcaccaaatatcaggtattgtatca 20887674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 30491655 - 30491525
Alignment:
Q  63 ttttctttccctccaccttcaaaaaccca-aaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctag 161  Q
    |||||||||||||||||| |||||||||  |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||  ||||||||||     
T  30491655 ttttctttccctccacctccaaaaacccccaaaagtgcgaaattttgagtcaaaatcttcattccaaatcattgcaaatcgtcaggagacaagtttctac 30491556  T
Q  162 gctcatcaagcatcaaatatcaggtaatgta 192  Q
    ||||||||||||||||| | |||||||||||    
T  30491555 gctcatcaagcatcaaagaacaggtaatgta 30491525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 38739554 - 38739682
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| |||||||||||||||||  || |||| ||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |    
T  38739554 ttttctttccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcaggaaacaag-ttctacg 38739652  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    |||||||||||||||| | |||||||||||    
T  38739653 ctcatcaagcatcaaagaacaggtaatgta 38739682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 34017538 - 34017398
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    ||||||||| |||||||| ||||||  | |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||| |    
T  34017538 ttttctttcactccacctccaaaaattccaaaagtgcaaaattttgggtaaaaatcttcatttcaaatcattgcaaatcgtcaggaaacaagtttctacg 34017439  T
Q  163 ctcatcaagcatcaaatatcaggtaatgtatcatctaaact 203  Q
    |||||||||||||||| | || |||||||||| || |||||    
T  34017438 ctcatcaagcatcaaagaacatgtaatgtatcgtcaaaact 34017398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 763243 - 763115
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    ||||||||||||||||||||||||  |||||| |||| ||||||| | | ||||||||||||||||||||||||||||||| ||||| ||| |||||| |    
T  763243 ttttctttccctccaccttcaaaattccaaaa-gtgcgaaattttggataaaaatcttcattccaaatcattgcaaatcgttaggaaacaaatttctacg 763145  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    |||||||||||||||| |  ||||||||||    
T  763144 ctcatcaagcatcaaagaataggtaatgta 763115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 5504930 - 5505069
Alignment:
Q  60 ccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttct 159  Q
    ||||||| ||||||||||||| ||||||| | |||||||||||||||| ||| |||||||||||    ||||||||||||||||||| || || ||||||    
T  5504930 ccattttttttccctccacctccaaaaactccaaaagtgcaaaattttgggtaaaaatcttcat----aatcattgcaaatcgtcagaaaacaggtttct 5505025  T
Q  160 aggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 203  Q
    | |||||||||| |||||| | ||||||||||| |||| |||||    
T  5505026 acgctcatcaagaatcaaagaacaggtaatgtaccatcaaaact 5505069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 35050432 - 35050308
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| | |||| ||||| |||||| |||||||||||||||||||||||||||||||   ||||||| | |  |||| |||||||||| |    
T  35050432 ctgttttcgtacaaaactcatcagtccagactccaagcaccattttctttccctccaccttcaaaaataaaaaaagtacgattttttgggtcaaaatcct 35050333  T
Q  121 cattccaaatcattgcaaatcgtca 145  Q
    ||| |||||||||||||||||||||    
T  35050332 catcccaaatcattgcaaatcgtca 35050308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 33144043 - 33143948
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttc 158  Q
    |||||||||||||||||| ||||| ||| |||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||| || ||||||||    
T  33144043 ttttctttccctccacctccaaaacccccaaaaatgcgaaattttgggtgaaaatcttcattccaaatcattgcaaatcgtcagaaaacaagtttc 33143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 16109319 - 16109403
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcagga 148  Q
    |||||||||||||||||| |||||||||||||||||| |  |||| |||||||||||||||||||||| |||| ||||||||||||    
T  16109319 ttttctttccctccacctccaaaaacccaaaaagtgcgattttttgggtcaaaatcttcattccaaattattg-aaatcgtcagga 16109403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 8736555 - 8736460
Alignment:
Q  58 caccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagc 151  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||||| ||||   |||||||||||||| |||||||||||||||| |||||||||    
T  8736555 cacccttttctttccctctccacctccaaaaacccaaaaagtgcaaatttttgaatcaaaatcttcatttcaaatcattgcaaatcatcaggaagc 8736460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 23276021 - 23276095
Alignment:
Q  126 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 200  Q
    |||||||||| ||| ||| ||||||||||||||||  ||||| || | ||||| || | ||||||||||||||||    
T  23276021 caaatcattggaaaacgttaggaagcaagtttctacactcataaaacgtcaaaaattatgtaatgtatcatctaa 23276095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 350
Target Start/End: Complemental strand, 17970292 - 17970148
Alignment:
Q  206 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 305  Q
    |||||| ||||| ||||||||| | ||  ||||| ||| |||||||||    ||||||||||||||||||||  | |||||||  || ||||| || | |    
T  17970292 taattgcaaagtgttgtcaaagctgatgccctcaaatttaccattgatgcgaaaaaacttgagatttggtgcgtgaatattaaactgagtgaaaccctta 17970193  T
Q  306 acttctgtgaatttaaatttttcaagcagggggcagccagatatc 350  Q
    |||  ||| ||| | |||||||||||| | |||||||| ||||||    
T  17970192 actgatgtcaatattaatttttcaagctgagggcagccggatatc 17970148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 50008978 - 50008793
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| |||||| ||||| |||| | ||||||||||||||||||| ||||||||||||| ||||||||| |  |||| |||||||||| |    
T  50008978 ctgttttcgtacaaaacccatcagtccaaactcgaagcaccattttctttccctcgaccttcaaaaaccaaaaaagtgcgattttttgggtcaaaatcct 50008879  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  50008878 catcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 50008793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 50336373 - 50336188
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| |||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |    
T  50336373 ctgttttcgtacaaaacccatcagtccaaacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcct 50336274  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| ||||| ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  50336273 catcccaaaccattgcaaatcgtcatgaagcaagtttctatgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 50336188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 22182286 - 22182152
Alignment:
Q  57 gcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtt 156  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  22182286 gcaccattttctttccctccacctccaaaaacccaaaaagtgcaattttttaggtcaaaatcttcattccaaatcattgcaaatcgttaagaagcaagtt 22182187  T
Q  157 tctaggctcatcaagcatcaaatatcaggtaatgt 191  Q
    |||| ||||||||||||||||||||||||||||||    
T  22182186 tctacgctcatcaagcatcaaatatcaggtaatgt 22182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 33990720 - 33990905
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| |||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |  |||| |||||||||| |    
T  33990720 ctgttttcgtacaaaacccatcagtccaaactccaagcaccattttctttccttccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcct 33990819  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| ||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  33990820 catcccaaatcattgcaaatcgtcatgaatcaagtttctacgctcatcaagcaccaaatatcaagtattgtatcatcaaaactcat 33990905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 43210171 - 43209986
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| ||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||||  |||||||| |  |||| |||||||||| |    
T  43210171 ctgttttcgtacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacc--aaaagtgcgattttttgggtcaaaatcct 43210074  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcagg--taatgtatcatctaaactcat 206  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  || ||||||||| ||||||||    
T  43210073 catcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtatattgtatcatcaaaactcat 43209986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 41418878 - 41419054
Alignment:
Q  30 tacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaa 129  Q
    |||||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |||| |||||    
T  41418878 tacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaa 41418977  T
Q  130 tcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||||| |||||||| |||| ||||||||||| |||||||||||| ||||||||||||| ||||||||  ||||||||    
T  41418978 tcattacaaatcgttaggacgcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcataaaaactcat 41419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 24972607 - 24972736
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  24972607 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 24972706  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    |||||||||||||||||| |||||||||||    
T  24972707 ctcatcaagcatcaaataacaggtaatgta 24972736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 1938538 - 1938702
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| | ||||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |    
T  1938538 ctgttttcgcacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcct 1938637  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcagg 185  Q
    ||| |||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||| ||||    
T  1938638 catcccaaatcattgcaaatcgtcagaaagaaagtttctatgctcatcaagcaccaaataccagg 1938702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 157027 - 156888
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| |||||||  ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |    
T  157027 ctgttttcgtacaaaatccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcct 156928  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttcta 160  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  156927 catcccaaatcattgcaaatcgtcaggaagcaagtttcta 156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 12656473 - 12656665
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat-------tttaggtca 113  Q
    ||||||| |||||||  ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || |       ||| |||||    
T  12656473 ctgttttcgtacaaaatccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaagtgcgattttttgggtca 12656572  T
Q  114 aaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||||| | || |||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  12656573 aaatccttatcccaaatcattgcaaatcgtcagaaagcaagtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 12656665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 23283379 - 23283508
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |    
T  23283379 ttttctttccctccacctccaaaaaccccaaaagtgcaaaattttgggtaaaaatcttcattctaaatcattgcaaatcgtcaggaaacaagtttctacg 23283478  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    |||||||||||||||| | |||||||||||    
T  23283479 ctcatcaagcatcaaagaacaggtaatgta 23283508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 36499124 - 36499250
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |    
T  36499124 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttctacg 36499223  T
Q  163 ctcatcaagcatcaaatatcaggtaat 189  Q
    |||||||||||||||| | ||||||||    
T  36499224 ctcatcaagcatcaaagaacaggtaat 36499250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 55523943 - 55524058
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||||| |    
T  55523943 ttttctttccctccacctgcaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgtaaatcgtcaggaaacaagtttctacg 55524042  T
Q  163 ctcatcaagcatcaaa 178  Q
    ||||||||||||||||    
T  55524043 ctcatcaagcatcaaa 55524058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 12586403 - 12586510
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||| |    
T  12586403 ttttctttccctccacctccaaaaaccccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaataagtttctacg 12586502  T
Q  163 ctcatcaa 170  Q
    ||||||||    
T  12586503 ctcatcaa 12586510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 45246888 - 45246749
Alignment:
Q  67 ctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctca 166  Q
    |||||||||||||| ||||||| | |||||||  ||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||| | |||||    
T  45246888 ctttccctccacctccaaaaactctaaaagtgtgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaagaaacaagtttccacgctca 45246789  T
Q  167 tcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||||||||| | ||||||||||| | || ||||||||    
T  45246788 tcaagcatcaaagaacaggtaatgtaccgtcaaaactcat 45246749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 5534257 - 5534180
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtg 98  Q
    ||||||| ||||||| |||||  || || |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5534257 ctgttttcgtacaaaacccattagtgcaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtg 5534180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 6599486 - 6599370
Alignment:
Q  61 cattttctttccctcc--accttcaaaaaccca-aaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagttt 157  Q
    |||||||||||||| |  |||| |||||||||  |||| ||| || |||| ||| |||||||||||| ||||||||||||| ||||||||||||| ||||    
T  6599486 cattttctttccctactcacctccaaaaacccccaaaaatgcgaattttttggtaaaaatcttcatttcaaatcattgcaagtcgtcaggaagcaggttt 6599387  T
Q  158 ctaggctcatcaagcat 174  Q
    ||| ||| |||||||||    
T  6599386 ctatgcttatcaagcat 6599370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 24904326 - 24904254
Alignment:
Q  126 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatct 198  Q
    |||||||||  ||| | ||| |||||||||||||| ||||||||| | ||||| |||| ||||||| ||||||    
T  24904326 caaatcattaaaaaacatcatgaagcaagtttctacgctcatcaaacgtcaaaaatcaagtaatgtgtcatct 24904254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 13868358 - 13868174
Alignment:
Q  24 tttttgtacaaagcccatcggtccatactccatgcaccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttc 121  Q
    |||| ||||||| |||||| ||||| |||| | |||||||||||||||||||  ||||| ||||||| ||||||||||||| |||| ||||||| |||||    
T  13868358 ttttggtacaaaacccatcagtccaaactctaagcaccattttctttccctctccacctccaaaaactcaaaaagtgcaaatttttgggtcaaattcttc 13868259  T
Q  122 attccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||| ||||||||||||||||||  ||||| |||||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  13868258 atttcaaatcattgcaaatcgtggggaagtaagtttctacactcatcaagcatcaaatattaggtaatgtatcatctaaactcat 13868174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 32075008 - 32075168
Alignment:
Q  45 tccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtc 144  Q
    ||||||||||| ||||||||||| ||||| |||||||  || || |||||||||  || |||| |||||||||| |||| ||||||||||| ||||| ||    
T  32075008 tccatactccaagcaccattttcattccc-ccaccttttaagactcaaaaagtgtgaatttttgggtcaaaatcctcatcccaaatcattgtaaatcatc 32075106  T
Q  145 aggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32075107 aggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 32075168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 24626214 - 24626034
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    |||||||| |||||| | |||  ||||||||| |||  |||||||||||||||| ||||| ||||||| ||||||||||||  |||| ||| ||||||||    
T  24626214 ctgtttttatacaaaactcattagtccatacttcataaaccattttctttccctgcacctccaaaaacacaaaaagtgcaattttttgggtaaaaatctt 24626115  T
Q  121 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||||||||||||||||||||| ||| |||||||||||||| |||||||||||     |||||| |||||||||||| |||||||||    
T  24626114 cattccaaatcattgcaaatcatcatgaagcaagtttctacgctcatcaagc-----atatcaagtaatgtatcatgtaaactcat 24626034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 2807338 - 2807153
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccatttt-ctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatct 119  Q
    ||||||||||||||| |||  | ||||||| ||   |||||||||| |||||||||||||| | |||||||||||||| |||  |||| |||||||||||    
T  2807338 ctgtttttgtacaaaacccggcagtccatattcaccgcaccatttttctttccctccacct-ctaaaacccaaaaagtacaattttttgggtcaaaatct 2807240  T
Q  120 tcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||  ||||||||||||||||| ||||||||||||  || |||| |||| ||||||| | |||||||||||||||| ||||||||    
T  2807239 tcatttgaaatcattgcaaatcgttaggaagcaagttcttacgctcgtcaaacatcaaagaacaggtaatgtatcatcaaaactcat 2807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 20534471 - 20534367
Alignment:
Q  13 cagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtc 112  Q
    ||||||| ||||||||||||||| ||||||  |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  20534471 cagagttactgtttttgtacaaaccccatcattccatacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaaattttgggtc 20534372  T
Q  113 aaaat 117  Q
    |||||    
T  20534371 aaaat 20534367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 58 - 206
Target Start/End: Original strand, 14189775 - 14189925
Alignment:
Q  58 caccattttctttccctcc--accttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagt 155  Q
    |||||||||||||||||||  |||| ||||| | |||||||||  |  |||| |||||||||||||||| |||||||||||||||||| |||||| ||||    
T  14189775 caccattttctttccctccctacctccaaaatctcaaaaagtgtgattttttgggtcaaaatcttcatttcaaatcattgcaaatcgttaggaagaaagt 14189874  T
Q  156 ttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    | ||| ||||||||||||| ||| |||||||||| |||||||| |||||||    
T  14189875 tactacgctcatcaagcataaaaaatcaggtaatatatcatcttaactcat 14189925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 20532180 - 20532087
Alignment:
Q  113 aaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||||| |||||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  20532180 aaaattttcattccaaatcattgcaaattgtatggaagcaagtttctacgctcatcaagcatcaaataccaggtaatgtatcatctaaactcat 20532087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 22661849 - 22661938
Alignment:
Q  13 cagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaa 102  Q
    ||||||| ||||||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  22661849 cagagttactgttttcgtacaaaacccatcagtccatactccaagcaccattttctttccctccaccttcaaaaacgcaaaaagtgcaaa 22661938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 34276417 - 34276538
Alignment:
Q  71 ccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaa 170  Q
    |||||||||| ||||||||| ||||| |  ||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||    
T  34276417 ccctccacctccaaaaaccccaaaagagagaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcatgaaacaagtttctacgcccatcaa 34276516  T
Q  171 gcatcaaatatcaggtaatgta 192  Q
     ||||||| | ||||| |||||    
T  34276517 ccatcaaagaacaggtgatgta 34276538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 41601078 - 41601191
Alignment:
Q  21 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 120  Q
    ||||||| |||||||  |||||| |||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |    
T  41601078 ctgttttcgtacaaaatccatcgatccaaacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcct 41601177  T
Q  121 cattccaaatcatt 134  Q
    ||| ||||||||||    
T  41601178 catcccaaatcatt 41601191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 27188323 - 27188174
Alignment:
Q  59 accattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtt 156  Q
    |||| ||||||||||||  || || |||||| | ||||| |||||  |||| ||| |||||||||||| ||||||||||| |||||||||||||||| ||    
T  27188323 accactttctttccctcttcaactccaaaaagctaaaaaatgcaattttttgggttaaaatcttcatttcaaatcattgctaatcgtcaggaagcaaatt 27188224  T
Q  157 tctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    || | || |||||| ||| ||| ||||||||||||||||||| |||||||    
T  27188223 tccacgcccatcaatcataaaaaatcaggtaatgtatcatcttaactcat 27188174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 22661933 - 22662005
Alignment:
Q  134 tgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||| ||||||||| ||||||||    
T  22661933 tgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaagtattaggtattgtatcatcaaaactcat 22662005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 33228335 - 33228371
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgc 99  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  33228335 ttttcttttcctccacctccaaaaacccaaaaagtgc 33228371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 2011 - 2205
Alignment:
Q  13 cagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtc 112  Q
    ||||||| ||||||| || |||| |||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |  |||| |||     
T  2011 cagagttactgttttcgtgcaaaacccatcagtccatactccaaacaccattttctttccctccacctttaaaaacccaaaaagtgcgattttttgggta 2110  T
Q  113 aaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggct-catcaagcatcaaatatcaggtaatgtatcatctaaactcat 206  Q
    |||||  ||||   |||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||||||| ||||||||| ||||||||    
T  2111 aaaatgctcatcttaaatcattgcaaatcgtcaggaagcaagtttctacgctccatcaaccaccaaatatcaggtattgtatcatcaaaactcat 2205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 31522484 - 31522355
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||||| |    
T  31522484 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttaattccaaatcattgcaaatcgtcaggaaacaagtttctatg 31522385  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    |||||||||||||||| | |||||||||||    
T  31522384 ctcatcaagcatcaaagaacaggtaatgta 31522355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 195
Target Start/End: Complemental strand, 13543798 - 13543661
Alignment:
Q  57 gcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtt 156  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||  |||| |||||||||||| |||||||||||||||||||||  |||||||||| |    
T  13543798 gcaccattttctttccctccacctccaaaaacccaaaaggtgcaatttttt-ggtcaaaatctttattccaaatcattgcaaatcggtaggaagcaagct 13543700  T
Q  157 tctaggctcatcaagcatcaaatatcaggtaatgtatca 195  Q
    |||| |||||||||||||||||||| ||||||| |||||    
T  13543699 tctacgctcatcaagcatcaaatattaggtaatctatca 13543661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 32275682 - 32275553
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||| ||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||| |||||| |    
T  32275682 ttttcttttcctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatctttgcaaatcgtcaggaaacaaatttctacg 32275583  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    |||||||||||||||| | || ||||||||    
T  32275582 ctcatcaagcatcaaagaacatgtaatgta 32275553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 8518467 - 8518615
Alignment:
Q  24 tttttgtacaaagcccatcggtccatactccatgcaccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttc 121  Q
    |||| ||||||| |||||  ||||  ||| || |||||||||| ||||||||  |||||  |||||||||||||||||||| ||||| ||||||||| ||    
T  8518467 ttttggtacaaaacccattagtcccaacttcaagcaccattttttttccctcttcacctctaaaaacccaaaaagtgcaaatttttatgtcaaaatcatc 8518566  T
Q  122 attccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaa 170  Q
    ||| ||||||||||  ||||||  ||||||||||||||| | |||||||    
T  8518567 atttcaaatcattgttaatcgttgggaagcaagtttctacgttcatcaa 8518615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 4321632 - 4321590
Alignment:
Q  92 aaaagtgcaaaattttaggtcaaaatcttcattccaaatcatt 134  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  4321632 aaaagtgcaaaattttgggtaaaaatcttcattccaaatcatt 4321590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 7452489 - 7452450
Alignment:
Q  58 caccattttctttccctccaccttcaaaaacccaaaaagt 97  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  7452489 caccattttctttccctccacctccaaaaaccaaaaaagt 7452450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 7452410 - 7452361
Alignment:
Q  146 ggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatca 195  Q
    |||||| | ||||||  |||||||| ||||||||||||||||||||||||    
T  7452410 ggaagctaatttctacactcatcaaacatcaaatatcaggtaatgtatca 7452361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 4321580 - 4321528
Alignment:
Q  152 aagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 204  Q
    ||||||||| ||||||||| ||||||| | ||||||||||| |||| ||||||    
T  4321580 aagtttctacgctcatcaatcatcaaagaacaggtaatgtaccatcaaaactc 4321528  T

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Target: scaffold0037 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 38248 - 38133
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| |||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  38248 ttttctttccctccacctccaaaaagccaaaaagtgcaaatttttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 38149  T
Q  163 ctcatcaagcatcaaa 178  Q
    ||||||||||||||||    
T  38148 ctcatcaagcatcaaa 38133  T

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Target: scaffold1063 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 1643 - 1772
Alignment:
Q  63 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 162  Q
    |||||||||||||||||| ||||||||| |||||||| || |||| ||  |||||||| |||||||||||||||||||||||||||| |||||||||| |    
T  1643 ttttctttccctccacctccaaaaaccccaaaagtgcgaatttttgggcaaaaatctttattccaaatcattgcaaatcgtcaggaaacaagtttctacg 1742  T
Q  163 ctcatcaagcatcaaatatcaggtaatgta 192  Q
    ||||||||||||| || | || ||||||||    
T  1743 ctcatcaagcatcgaagaacatgtaatgta 1772  T

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