View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21475_high_5 (Length: 350)

Name: NF21475_high_5
Description: NF21475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21475_high_5
NF21475_high_5
[»] chr4 (3 HSPs)
chr4 (155-241)||(1159299-1159385)
chr4 (108-159)||(1159214-1159268)
chr4 (286-337)||(1159407-1159461)
[»] chr7 (1 HSPs)
chr7 (3-51)||(23106663-23106711)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 1159299 - 1159385
Alignment:
Q  155 aaaaatgtaacaataaggaaagtatagtacttacttacatagagtttccttactttaattaagaggcgtatcaatcacattacatac 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1159299 aaaaatgtaacaataaggaaagtatagtacttacttacatagagtttccttactttaattaagaggcgtatcaatcacattacatac 1159385  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 1159214 - 1159268
Alignment:
Q  108 tataatactcatataga---gaaaaagctgtaatgtttctttcagttgccaaaaa 159  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  1159214 tataatactcatatagatcagaaaaagctgtaatgtttctttcagttgccaaaaa 1159268  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 1159407 - 1159461
Alignment:
Q  286 tcccaagaaaatgacattattattttt---tggttaggaaaatgacatttgctct 337  Q
    |||||||||||||||||||||||| ||   |||||||||||||||||||||||||    
T  1159407 tcccaagaaaatgacattattattattatttggttaggaaaatgacatttgctct 1159461  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 23106711 - 23106663
Alignment:
Q  3 cttaagtcaaatcaatagtaataaatggtgtatattatttttatacaat 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23106711 cttaagtcaaatcaatagtaataaatggtgtatactatttttatacaat 23106663  T

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