View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21475_high_6 (Length: 339)
Name: NF21475_high_6
Description: NF21475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21475_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 50806530 - 50806810
Alignment:
| Q |
30 |
acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50806530 |
acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc |
50806629 |
T |
|
| Q |
130 |
acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50806630 |
acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg |
50806729 |
T |
|
| Q |
230 |
acctgctgttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagatta |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50806730 |
acctgctgttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagatta |
50806810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 310
Target Start/End: Complemental strand, 50869347 - 50869067
Alignment:
| Q |
30 |
acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50869347 |
acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc |
50869248 |
T |
|
| Q |
130 |
acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50869247 |
acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg |
50869148 |
T |
|
| Q |
230 |
acctgctgttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagatta |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50869147 |
acctgctgttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagatta |
50869067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 30 - 310
Target Start/End: Complemental strand, 44196331 - 44196067
Alignment:
| Q |
30 |
acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc |
129 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44196331 |
acatgcataatgggaacaaaaggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaactta--- |
44196235 |
T |
|
| Q |
130 |
acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg |
229 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44196234 |
-------------gcgcttatgtataagctgtttttatttaaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg |
44196148 |
T |
|
| Q |
230 |
acctgctgttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagatta |
310 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44196147 |
acctgcagttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagatta |
44196067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 48553855 - 48554026
Alignment:
| Q |
30 |
acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc |
129 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
48553855 |
acatgcataatgggaacaaaaggctatgctgctcctgagtatatcatgtcaggtattggcattttaccatataggttccatttggattaacaacttaagc |
48553954 |
T |
|
| Q |
130 |
acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttg |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||| |||||| |
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|
| T |
48553955 |
acttatagcataagcgtttatgtataagctatttttatataaaataaagtcagattgttttcataaaagttg |
48554026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 26599146 - 26599176
Alignment:
| Q |
168 |
ataaaataaagtcaaatagttttcatataag |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
26599146 |
ataaaataaagtcaaatagttttcatataag |
26599176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 39362045 - 39362118
Alignment:
| Q |
124 |
ttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| || || |||||||||| |||||||| |||||| |
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|
| T |
39362045 |
ttaagcacttatagcataagcacttatgtataagctattttcat---aataaaagtcaaattgttttcatgtaagtt |
39362118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 39591569 - 39591530
Alignment:
| Q |
168 |
ataaaataaagtcaaatagttttcatataagttgctttga |
207 |
Q |
| |
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||||||||||||||||| |||||||||||||||| ||||| |
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| T |
39591569 |
ataaaataaagtcaaattgttttcatataagttgttttga |
39591530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 30456552 - 30456520
Alignment:
| Q |
168 |
ataaaataaagtcaaatagttttcatataagtt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
30456552 |
ataaaataaagtcaaattgttttcatataagtt |
30456520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 35536075 - 35536107
Alignment:
| Q |
168 |
ataaaataaagtcaaatagttttcatataagtt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
35536075 |
ataaaataaagtcaaattgttttcatataagtt |
35536107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 2732360 - 2732311
Alignment:
| Q |
147 |
ttatgtataagctgtttttatataaaataaagtcaaatagttttcatataag |
198 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |||||||||||| |
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|
| T |
2732360 |
ttatgtataagctatttttata--aaataaagtcaaattattttcatataag |
2732311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 31038969 - 31038937
Alignment:
| Q |
168 |
ataaaataaagtcaaatagttttcatataagtt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
31038969 |
ataaaataaagtcaaattgttttcatataagtt |
31038937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 33944571 - 33944603
Alignment:
| Q |
166 |
atataaaataaagtcaaatagttttcatataag |
198 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
33944571 |
atataaaataaagtcaaattgttttcatataag |
33944603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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