View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21475_high_9 (Length: 319)
Name: NF21475_high_9
Description: NF21475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21475_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 31907584 - 31907385
Alignment:
| Q |
13 |
aatactaactaaacatcatagaatgtaaccaaactaatagaaaacatatggttgaaaatataaaatttcaattttcagctacaaaatgacaataccaaac |
112 |
Q |
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| T |
31907584 |
aatattaactaaacatcatagaatgtaaccaaactaatagaaaacatatggttgaaaatataaaatttcaattttcagctacaaaatgacaataccaaac |
31907485 |
T |
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| Q |
113 |
aagagtaattcatagagatactcctccacagaacctatatagcaacttctaacttcacacataaaagcctttcaaactcatcattttaaattttgaactg |
212 |
Q |
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| T |
31907484 |
aagagtaatccatagagatactcttccacacaacctatatagcaacttctaacttcacacataaaagcctttcaaactcatcattttaaattttaaactg |
31907385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Complemental strand, 31907305 - 31907266
Alignment:
| Q |
280 |
ttgataatcatcatatcataatcataattataatgataat |
319 |
Q |
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| T |
31907305 |
ttgataatcatcatatcataatcataattataatgataat |
31907266 |
T |
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