View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21476_low_1 (Length: 205)
Name: NF21476_low_1
Description: NF21476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21476_low_1 |
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| [»] scaffold0831 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 6432625 - 6432437
Alignment:
| Q |
1 |
gttcacacaaaacatatatgtgaaaagaagtcgtctttgcatgctttgagatcatagctacggatccattcaacactgtcaaatccaagtagctctctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6432625 |
gttcacacaaaacatatatgtgaaaagaagtcgtctttgcatgctttgagatcatagctacggatccattcaacactgtcaaatccaagtagctctctac |
6432526 |
T |
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| Q |
101 |
ccactcatcgggataactatcttccatatcaaaaggtaagagtgtagtagaaaacacttcactgctcaagttaaacgaaaccatatatt |
189 |
Q |
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| T |
6432525 |
ccactcatcgagataactatcttccatatcaaaaggtaagagtttagtagaaaacacttcactgctcaagttaaacgaaaccatatatt |
6432437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 1327284 - 1327216
Alignment:
| Q |
8 |
caaaacatatatgtgaaaagaagtcgtctttgcatgctttgagatcatagctacggatccattcaacac |
76 |
Q |
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| T |
1327284 |
caaaacatatatgtgaaaagaagatgtctttacatgctttgagatcatagcaacgaacccatttaacac |
1327216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 4877823 - 4877777
Alignment:
| Q |
8 |
caaaacatatatgtgaaaagaagtcgtctttgcatgctttgagatca |
54 |
Q |
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| T |
4877823 |
caaaacatatatgtgaaaagaagttgtctttacatgctttgagatca |
4877777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 44186131 - 44186063
Alignment:
| Q |
8 |
caaaacatatatgtgaaaagaagtcgtctttgcatgctttgagatcatagctacggatccattcaacac |
76 |
Q |
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| T |
44186131 |
caaaacatatatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacac |
44186063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 26532268 - 26532183
Alignment:
| Q |
99 |
acccactcatcgggataactatcttccatatcaaaaggtaagagtgtagtagaaaacacttcactgctcaagttaaacgaaaccat |
184 |
Q |
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| T |
26532268 |
acccattcatcatgatatctatcttgcatatccaagggtaacagtgtagtagaaaacatctcagtgctcaagttaaaagaaaccat |
26532183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26532375 - 26532318
Alignment:
| Q |
1 |
gttcacacaaaacatatatgtgaaaagaagtcgtctttgcatgctttgagatcatagc |
58 |
Q |
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| T |
26532375 |
gttcacccaaaacatatatgtgaaaagctgctgtctttacatgctttaagatcatagc |
26532318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1359 - 1403
Alignment:
| Q |
1 |
gttcacacaaaacatatatgtgaaaagaagtcgtctttgcatgct |
45 |
Q |
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| T |
1359 |
gttcacccaaaacatatatgtgaaaataagttgtctttacatgct |
1403 |
T |
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