View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21478_high_12 (Length: 239)
Name: NF21478_high_12
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_high_12 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 16384289 - 16384415
Alignment:
| Q |
90 |
atttaactaaattattctacataatttatatagatatagtcattattcattaagtcatgtgggtacctcaatccgagaaagtctatcagtcaccatacaa |
189 |
Q |
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| T |
16384289 |
atttaactaaattattccacataatttatatagatatagtcattattcgttaagtcatgtgggtacctcaatccgagaaagtctatcagtcaccatacaa |
16384388 |
T |
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| Q |
190 |
agattctttgggttgcttccaaatttc |
216 |
Q |
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| T |
16384389 |
agattctttgagttgcttccaaatttc |
16384415 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 16383369 - 16383440
Alignment:
| Q |
18 |
acaactagtggcatttccttttggtcattaatgatcttcnnnnnnngataataaggaaaatcaccaatatgt |
89 |
Q |
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| T |
16383369 |
acaactagtggcatttccttttggtcattaatgatcttcaaaaaaagataataaggaaaatcatcaatatgt |
16383440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 14954 - 14889
Alignment:
| Q |
150 |
gggtacctcaatccgagaaagtctatcagtcaccatacaaagattctttgggttgcttccaaattt |
215 |
Q |
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| T |
14954 |
gggtacctcgatccgagaaggtctatcagtcaccatacaaagattctttaggttgcttccgaattt |
14889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 15219 - 15181
Alignment:
| Q |
18 |
acaactagtggcatttccttttggtcattaatgatcttc |
56 |
Q |
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| T |
15219 |
acaactagtggcatttctttttggtcattaatgatcttc |
15181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 271002 - 270961
Alignment:
| Q |
153 |
tacctcaatccgagaaagtctatcagtcaccatacaaagatt |
194 |
Q |
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| T |
271002 |
tacctcaatccgagaaggtctgtcagtcaccatacgaagatt |
270961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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