View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21478_high_13 (Length: 233)
Name: NF21478_high_13
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_high_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 233
Target Start/End: Complemental strand, 19582983 - 19582824
Alignment:
| Q |
74 |
catcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaacacagccacaaccatcacctcaagactc |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
19582983 |
catcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaacacagccacaaccatcacctgaaaactc |
19582884 |
T |
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| Q |
174 |
tccactaaagcgaaaacatccactacaagatcctcagccatcatcaccaaagcgacatct |
233 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19582883 |
tccactaaagcgaaaacatccactccaagatcctcagccatcatcaccaaagcgacatct |
19582824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 19590602 - 19590761
Alignment:
| Q |
74 |
catcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaacacagccacaaccatcacctcaagactc |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
19590602 |
catcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaacacagccacaaccatcacctgaaaactc |
19590701 |
T |
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| Q |
174 |
tccactaaagcgaaaacatccactacaagatcctcagccatcatcaccaaagcgacatct |
233 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19590702 |
tccactaaagcgaaaacatccactccaagatcctcagccatcatcaccaaagcgacatct |
19590761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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