View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21478_high_16 (Length: 203)
Name: NF21478_high_16
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_high_16 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 19583005 - 19582824
Alignment:
| Q |
22 |
gccaccatgtctcagcatcaagcatcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaacacagc |
121 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19583005 |
gccaccatgtcgcagcatcaaccatcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaacacagc |
19582906 |
T |
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| Q |
122 |
cacaaccatcacctcaagactctccactaaagcgaaaacatccactacaagatcctcagccatcatcaccaaagcgacatct |
203 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19582905 |
cacaaccatcacctgaaaactctccactaaagcgaaaacatccactccaagatcctcagccatcatcaccaaagcgacatct |
19582824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 19590580 - 19590761
Alignment:
| Q |
22 |
gccaccatgtctcagcatcaagcatcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaacacagc |
121 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19590580 |
gccaccatgtcgcagcatcaaccatcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaacacagc |
19590679 |
T |
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| Q |
122 |
cacaaccatcacctcaagactctccactaaagcgaaaacatccactacaagatcctcagccatcatcaccaaagcgacatct |
203 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19590680 |
cacaaccatcacctgaaaactctccactaaagcgaaaacatccactccaagatcctcagccatcatcaccaaagcgacatct |
19590761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 19590520 - 19590565
Alignment:
| Q |
22 |
gccaccatgtctcagcatcaagcatcaccagccgccacgtcgcagc |
67 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
19590520 |
gccaccatgtcgcagcatcaaccatcaccagccgccacgtcgcagc |
19590565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 19583053 - 19583020
Alignment:
| Q |
34 |
cagcatcaagcatcaccagccgccacgtcgcagc |
67 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
19583053 |
cagcatcaaccatcaccagccgccacgtcgcagc |
19583020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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