View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21478_high_4 (Length: 614)
Name: NF21478_high_4
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 581; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 2018805 - 2019401
Alignment:
| Q |
1 |
agatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactcacatgatgtttccttattcaacttgagcaaataga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018805 |
agatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttattcaacttgagcaaataga |
2018904 |
T |
|
| Q |
101 |
agtatgaagacaaactggcgactgaagaaggaaagtaaacataggacaacatgttgaactctttagcaaaatctagtgcatcgattgctaatgaatcaac |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018905 |
agtatgaagacaaactggtgactgaagaaggaaagtaaacataggacaacatgttgaactctttagcaaaatctagtgcatcgattgctaatgaatcaac |
2019004 |
T |
|
| Q |
201 |
caccaaggcaacaaagggtgtccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgaattactgtgagctgaatttgaagtactaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2019005 |
caccaaggcaacaaagggtgtccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgaattactgtgagctgaatttgaagtactaaa |
2019104 |
T |
|
| Q |
301 |
gcaatcccttgtggtaagtctttggagctcactgatggaagaaaagtacagttgatgtttgatggaagagtttgaatgatggtttttgaatcggttggga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2019105 |
gcaatcccttgtggtaagtctttggagctcactgatggaagaaaagtacagttgatgtttgatggaagagtttgaatgatggtttttgaatcggttggga |
2019204 |
T |
|
| Q |
401 |
gagactcaattgagggaatgaaacatgtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2019205 |
gagactcaattgagggaatgaaacatgtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatcc |
2019304 |
T |
|
| Q |
501 |
aacacctggaacaactgcaatatgaactgttttctccatgaaaatttgttattagtttacagcttataagtgaattcttttattttatgcttgtgaa |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2019305 |
aacacctggaacaactgcaatatgaactgttttctccatgaaaattagttattagtttacagcttataagtgaattctttaattttatgcttgtgaa |
2019401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 3 - 571
Target Start/End: Complemental strand, 1963005 - 1962437
Alignment:
| Q |
3 |
atcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactcacatgatgtttccttattcaacttgagcaaatagaag |
102 |
Q |
| |
|
|||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
1963005 |
atcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
1962906 |
T |
|
| Q |
103 |
tatgaagacaaactggcgactgaagaaggaaagtaaacataggacaacatgttgaactctttagcaaaatctagtgcatcgattgctaatgaatcaacca |
202 |
Q |
| |
|
|||||||||||| || ||| |||| ||| |||||||||||||||||| |||||| || |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
1962905 |
tatgaagacaaagaggtgacagaagcagggtagtaaacataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaacca |
1962806 |
T |
|
| Q |
203 |
ccaaggcaacaaagggtgtccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgaattactgtgagctgaatttgaagtactaaagc |
302 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||| |
|
|
| T |
1962805 |
ccaaggcaacaaagggtgcccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagc |
1962706 |
T |
|
| Q |
303 |
aatcccttgtggtaagtctttggagctcactgatggaagaaaagtacagttgatgtttgatggaagagtttgaatgatggtttttgaatcggttgggaga |
402 |
Q |
| |
|
|| ||||||||||| ||| || ||| |||||| |||||||||||||||| ||||||||||||||||||||| || || ||||||||||| ||||||||| |
|
|
| T |
1962705 |
aaccccttgtggtaggtcattagagttcactggtggaagaaaagtacagctgatgtttgatggaagagtttcaagtattgtttttgaatcagttgggaga |
1962606 |
T |
|
| Q |
403 |
gactcaattgagggaatgaaacatgtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatccaa |
502 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
1962605 |
gaaccaagtgagggaatgaagcatgtgacatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaa |
1962506 |
T |
|
| Q |
503 |
cacctggaacaactgcaatatgaactgttttctccatgaaaatttgttattagtttacagcttataagt |
571 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1962505 |
caccaggaacaactgcaatatgaactgttttctccatgaaaatttgttcttagtttacagcttataagt |
1962437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 2015422 - 2015990
Alignment:
| Q |
1 |
agatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactcacatgatgtttccttattcaacttgagcaaataga |
100 |
Q |
| |
|
|||||| |||||||||| || |||| |||||||||||||||||| | |||||||| ||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
2015422 |
agatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgcatgatgtttccttatctaacttgagcaaataga |
2015521 |
T |
|
| Q |
101 |
agtatgaagacaaactggcgactgaagaaggaaagtaaacataggacaacatgttgaactctttagcaaaatctagtgcatcgattgctaatgaatcaac |
200 |
Q |
| |
|
|||||||||||||||||| | |||||| ||| |||||||||||||||||| |||||| || ||||||||||| |||||||| |||||| || |||||| |
|
|
| T |
2015522 |
agtatgaagacaaactggtggctgaagcagggtagtaaacataggacaacaagttgaattccttagcaaaatccagtgcatccattgctgatatatcaac |
2015621 |
T |
|
| Q |
201 |
caccaaggcaacaaagggtgtccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgaattactgtgagctgaatttgaagtactaaa |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||| |
|
|
| T |
2015622 |
caccaaggcaacaaagggtgtctttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgagtcagtgtgagctgaagttgaagtactaaa |
2015721 |
T |
|
| Q |
301 |
gcaatcccttgtggtaagtctttggagctcactgatggaagaaaagtacagttgatgtttgatggaagagtttgaatgatggtttttgaatcggttggga |
400 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
2015722 |
gcaatcccttgtggtaggtcattggagttcactggtggaagaaaagtacagctgatgtttgatggaagagtttgaaggattgtttttgaatcagttggga |
2015821 |
T |
|
| Q |
401 |
gagactcaattgagggaatgaaacatgtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatcc |
500 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | || || |||| |||||| |
|
|
| T |
2015822 |
gagaaccaagtgagggaatgaagcatgtgacatgaaagtttggatgaagctgaacaagtctcttggagaattgaagaatagagaccaaatggctatatcc |
2015921 |
T |
|
| Q |
501 |
aacacctggaacaactgcaatatgaactgttttctccatgaaaatttgttattagtttacagcttataa |
569 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
2015922 |
aacacctggaacaactgcaatatgaattgttttctccataaaaatttgttcttagtttaccgcttataa |
2015990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 305 - 548
Target Start/End: Original strand, 2008712 - 2008955
Alignment:
| Q |
305 |
tcccttgtggtaagtctttggagctcactgatggaagaaaagtacagttgatgtttgatggaagagtttgaatgatggtttttgaatcggttgggagaga |
404 |
Q |
| |
|
|||||||||||| ||| |||| | |||| | |||||||||||| |||||||||||||||||||||||||| ||| | ||||| | ||| | |||| |
|
|
| T |
2008712 |
tcccttgtggtaggtcattggggttcacaggtggaagaaaagtgtggttgatgtttgatggaagagtttgaaggatagattttgtggcatttgagggaga |
2008811 |
T |
|
| Q |
405 |
ctcaattgagggaatgaaacatgtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatccaaca |
504 |
Q |
| |
|
||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| || |||| |||||||||| |
|
|
| T |
2008812 |
tccaagcgtgggaatgaaacatgtgacatgaaagtttggatgaagctgaacaagtctcttggagaattgaagaatagggaccaaatggctatatccaaca |
2008911 |
T |
|
| Q |
505 |
cctggaacaactgcaatatgaactgttttctccatgaaaatttg |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2008912 |
cctggaacaactgcaatatgaactgttttctccatggaaatttg |
2008955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 305 - 549
Target Start/End: Original strand, 2005332 - 2005576
Alignment:
| Q |
305 |
tcccttgtggtaagtctttggagctcactgatggaagaaaagtacagttgatgtttgatggaagagtttgaatgatggtttttgaatcggttgggagaga |
404 |
Q |
| |
|
|||||||||||| ||| || | | |||| | ||||||||||||| |||||||||||||||||||||||||| ||| | ||||| |||| | |||| |
|
|
| T |
2005332 |
tcccttgtggtaggtcattagggttcacaggtggaagaaaagtatggttgatgtttgatggaagagtttgaaggatagattttgtggtagttgagggaga |
2005431 |
T |
|
| Q |
405 |
ctcaattgagggaatgaaacatgtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatccaaca |
504 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| | || || |||| |||||||||| |
|
|
| T |
2005432 |
tccaagtgagggaatgaaacatgtgacatgaaagtttggatgaagttgaacaagtctcttggagaattgaagaatagagaccaaatggctatatccaaca |
2005531 |
T |
|
| Q |
505 |
cctggaacaactgcaatatgaactgttttctccatgaaaatttgt |
549 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
2005532 |
cctggaacaactgcaatatgaattgttttctccatggaaacttgt |
2005576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 305 - 548
Target Start/End: Complemental strand, 1968303 - 1968060
Alignment:
| Q |
305 |
tcccttgtggtaagtctttggagctcactgatggaagaaaagtacagttgatgtttgatggaagagtttgaatgatggtttttgaatcggttgggagaga |
404 |
Q |
| |
|
|||||||||||| ||| |||| |||| | |||||||||||| |||||||||||||||||||||||||| ||| | ||||| | ||| | |||| |
|
|
| T |
1968303 |
tcccttgtggtaggtcattgggattcacaggtggaagaaaagtgtggttgatgtttgatggaagagtttgaaggatagattttgtggcatttgagggaga |
1968204 |
T |
|
| Q |
405 |
ctcaattgagggaatgaaacatgtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatccaaca |
504 |
Q |
| |
|
||| || |||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||| || || | |||||||||| |
|
|
| T |
1968203 |
tccaagtgtgggaatgaaacatgtgacatgaaagtctggatgaagttgaacaagtctcttggagaattgaagaatagggaccaaatgactatatccaaca |
1968104 |
T |
|
| Q |
505 |
cctggaacaactgcaatatgaactgttttctccatgaaaatttg |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1968103 |
cctggaacaactgcaatatgaactgttttctccatggaaatttg |
1968060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 423 - 567
Target Start/End: Original strand, 2013377 - 2013522
Alignment:
| Q |
423 |
acatgtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatccaacacctggaacaactgcaata |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
2013377 |
acatgtgacatgaaagtatggatgaagctgaacaagtagcttcgaaaattgaagaattgggaataagtgactatatccaacacctggaacaactgcaata |
2013476 |
T |
|
| Q |
523 |
tgaactgttttctccatgaaaatttgtt-attagtttacagcttat |
567 |
Q |
| |
|
|||| | ||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
2013477 |
tgaatttttttctccatggaaatttgttgtttagtttacagcttat |
2013522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 358 - 543
Target Start/End: Original strand, 2012380 - 2012565
Alignment:
| Q |
358 |
tttgatggaagagtttgaatgatggtttttgaatcggttgggagagactcaattgagggaatgaaacatgtgacatgaaagtatggatgaagctgaacaa |
457 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||| ||||| |||| ||| || |||||||| |||||||||||||| || ||||||||||| | || |
|
|
| T |
2012380 |
tttgatggaagggtttgaaggatggtttctgaggaacttgggggagaaccaagtgtgggaatgatacatgtgacatgaatgtccggatgaagctggataa |
2012479 |
T |
|
| Q |
458 |
gtagcttggagaattgaagaatcgggaataagtggccatatccaacacctggaacaactgcaatatgaactgttttctccatgaaa |
543 |
Q |
| |
|
||| ||| ||||| |||||||| |||| |||||| ||||| || |||||||||||||| ||||| |||| |||||| ||||||||| |
|
|
| T |
2012480 |
gtaactttgagaaatgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaattgttttatccatgaaa |
2012565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 1968598 - 1968508
Alignment:
| Q |
10 |
ccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactcacatgatgtttccttattcaacttgagcaaataga |
100 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| | | |||| | ||||||||||||||||||| || || ||| ||||||||| |
|
|
| T |
1968598 |
ccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatccagcttaggcaaataga |
1968508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 2008425 - 2008509
Alignment:
| Q |
18 |
tggtacacagcctggtatttgaataggctctagaagatctttgtactcacatgatgtttccttattcaacttgagcaaatagaag |
102 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| | |||| | ||||||||||||||||||| || || ||| ||||||||||| |
|
|
| T |
2008425 |
tggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatccagcttaggcaaatagaag |
2008509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 290
Target Start/End: Original strand, 2012154 - 2012312
Alignment:
| Q |
132 |
aaagtaaacataggacaacatgttgaactctttagcaaaatctagtgcatcgattgctaatgaatcaaccaccaaggcaacaaagggtgtccttaaagtt |
231 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||||||| | |||||| || | || || | ||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
2012154 |
aaagtatatataggacaacatgttgaattctttagcaaagtttagtgcttcaacagcaaaagcatcaaccaccaaggccacaaggggaatccttaaagca |
2012253 |
T |
|
| Q |
232 |
aaggacttcaaggcctgatgtatagatggcagtgagtgaattactgtgagctgaatttg |
290 |
Q |
| |
|
| |||||||| |||| ||| | | |||| || || | | | ||||||||||||||||| |
|
|
| T |
2012254 |
agagacttcaatgcctcatgcaaatatgggagagaattagtaactgtgagctgaatttg |
2012312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 546
Target Start/End: Complemental strand, 1964547 - 1964500
Alignment:
| Q |
499 |
ccaacacctggaacaactgcaatatgaactgttttctccatgaaaatt |
546 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
1964547 |
ccaacacctggaacaactgcaatgtgaatggttttctccatggaaatt |
1964500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 2005037 - 2005129
Alignment:
| Q |
10 |
ccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactcacatgatgtttccttattcaacttgagcaaatagaag |
102 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||| || | | |||| ||||||||||||||||| | || |||||| ||||||||||| |
|
|
| T |
2005037 |
ccatggattggtacacaacctggtatttttataggcactggtatatctccatactcacatgatgtttcttcatccaacttaggcaaatagaag |
2005129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 5902186 - 5901638
Alignment:
| Q |
1 |
agatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactcacatgatgtttccttattcaacttgagcaaataga |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||| |||||| ||||||||| ||| | |||||| |||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
5902186 |
agatcccgaccacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatccaatttgagcaaataga |
5902087 |
T |
|
| Q |
101 |
agtatgaagacaaactggcgactgaagaaggaaagtaaacataggacaacatgttgaactctttagcaaaatctagtgcatcgattgctaatgaatcaac |
200 |
Q |
| |
|
|||| |||||||| ||| | ||| || ||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||| | ||| |||||||| |
|
|
| T |
5902086 |
agtagaaagacaaagtggtggctgcaggagggaagtaaacataggacaacatgttgaactccttagccaaatctagtgcttcggcagataaagaatcaac |
5901987 |
T |
|
| Q |
201 |
caccaaggcaacaaagggtgtccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgaattactgtgagctgaatttgaagtactaaa |
300 |
Q |
| |
|
||||| || ||| ||| ||||||||||||||||| ||||| |||||||||| | ||||||| | | | | || ||| |||||||| | ||| | |
|
|
| T |
5901986 |
caccagtgccacagggggagtccttaaagttaaggagttcaatgcctgatgtaaatatggcagagtgagtgtcgttgcgagatgaatttggcattctaca |
5901887 |
T |
|
| Q |
301 |
gcaatcccttgtggtaagtctttggagctcactgatggaagaaaagtacagttgatgtttgatggaagagtttgaatgatggtttttgaatcggttggga |
400 |
Q |
| |
|
| ||||||| |||| ||| |||| |||| | |||||||||||| || |||||||||||||||||||||| || | ||||| | ||| | |
|
|
| T |
5901886 |
ctagtcccttgaggtaggtcgttgggattcacaggtggaagaaaagtgtagccaatgtttgatggaagagtttgaaggaatgactttgaggcacttgagg |
5901787 |
T |
|
| Q |
401 |
gagactcaattgagggaatgaaacatgtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatcc |
500 |
Q |
| |
|
| || ||| || |||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||| |||||| | || ||| |||| ||| | |
|
|
| T |
5901786 |
gtgatccaagtgtaggaatgaagcaagtgacatgaaagtctggatggagctgaacaagtagcttggagaattcaagaatagagactaaatggctatacca |
5901687 |
T |
|
| Q |
501 |
aacacctggaacaactgcaatatgaactgttttctccatgaaaatttgt |
549 |
Q |
| |
|
| ||||||||| ||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
5901686 |
agcacctggaataacagcaatgtgaattgttttctccatgaaaatttgt |
5901638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 351 - 548
Target Start/End: Complemental strand, 18189622 - 18189425
Alignment:
| Q |
351 |
gttgatgtttgatggaagagtttgaatgatggtttttgaatcggttgggagagactcaattgagggaatgaaacatgtgacatgaaagtatggatgaagc |
450 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| || ||| ||||| |||| ||| || | |||||| ||||||| |||||| || ||||||||| |
|
|
| T |
18189622 |
gttgatatttgatggaagagtttgaaggatgggttctgaggaacttgggggagaaccaagtgtgcgaatgatacatgtggcatgaatgtctggatgaaga |
18189523 |
T |
|
| Q |
451 |
tgaacaagtagcttggagaattgaagaatcgggaataagtggccatatccaacacctggaacaactgcaatatgaactgttttctccatgaaaatttg |
548 |
Q |
| |
|
|| | ||||| ||| |||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||| |||| |||||| |||||| ||||||| |
|
|
| T |
18189522 |
tggataagtaactttgagaattgaagaatagggactaagtgtccatacccaacacctggaacaactgcaatgtgaattgttttatccatggaaatttg |
18189425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 16566074 - 16566017
Alignment:
| Q |
122 |
ctgaagaaggaaagtaaacataggacaacatgttgaactctttagcaaaatctagtgc |
179 |
Q |
| |
|
||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
16566074 |
ctgaacaagggaagtaaacataagacaaagaattgaactctttagcaaaatctagtgc |
16566017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 16599588 - 16599645
Alignment:
| Q |
122 |
ctgaagaaggaaagtaaacataggacaacatgttgaactctttagcaaaatctagtgc |
179 |
Q |
| |
|
||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
16599588 |
ctgaacaagggaagtaaacataagacaaagaattgaactctttagcaaaatctagtgc |
16599645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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