View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21478_high_9 (Length: 298)

Name: NF21478_high_9
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21478_high_9
NF21478_high_9
[»] chr5 (1 HSPs)
chr5 (78-298)||(13717412-13717635)
[»] chr6 (9 HSPs)
chr6 (73-296)||(29727699-29727921)
chr6 (84-296)||(29759195-29759406)
chr6 (92-298)||(29469442-29469647)
chr6 (76-296)||(29673758-29673977)
chr6 (73-296)||(28479118-28479340)
chr6 (73-296)||(28490236-28490458)
chr6 (73-296)||(29791573-29791795)
chr6 (73-296)||(29802646-29802868)
chr6 (73-296)||(29695135-29695357)
[»] chr8 (1 HSPs)
chr8 (73-296)||(12589952-12590174)
[»] chr3 (1 HSPs)
chr3 (73-296)||(615007-615229)
[»] scaffold0012 (2 HSPs)
scaffold0012 (73-256)||(238652-238836)
scaffold0012 (73-296)||(211870-212092)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 78 - 298
Target Start/End: Original strand, 13717412 - 13717635
Alignment:
Q  78 aaaacttgtcgtagcatatgattctggtcttcc--actcgctttggaagtcattggtcttcc-ttttttaataagaccaaagaacaatttaatgatacac 174  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  13717412 aaaacttgtcgtagcatatgattctggtcttccgcactcgctttggaagtcattggttttcccttttttaataagacaaaagaacaatttaatgatacac 13717511  T
Q  175 tagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnncttgac 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  13717512 tagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgtttttttcttgac 13717611  T
Q  275 attgcttgttgcttcaaaggatat 298  Q
    ||||||||||||||||||||||||    
T  13717612 attgcttgttgcttcaaaggatat 13717635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 73 - 296
Target Start/End: Complemental strand, 29727921 - 29727699
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattggtcttc-cttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||| ||| ||| ||| ||||||  ||||||| ||||||||||||||||||||| |||  || ||||| ||||||||| | |||||||| ||| |||     
T  29727921 gttttagaacgtgttgtaacatatgcctctggtcatccactcgctttggaagtcatgggttctcacttttctaataagacaatagaacaatgtaaagatg 29727822  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnnctt 271  Q
    |||||||| ||||||||||||||| | || | || |||||||  | ||| ||| ||||||| |||||| |  |||| |||||||||| ||       |||    
T  29727821 cactagatcgttacgaaaaaattcctcataaaaagatccaaatgacactacaagtgagctttgatgctctggaggacgaagagaagtttg--tttttctt 29727724  T
Q  272 gacattgcttgttgcttcaaaggat 296  Q
    |||||||||||||||||||||||||    
T  29727723 gacattgcttgttgcttcaaaggat 29727699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 296
Target Start/End: Complemental strand, 29759406 - 29759195
Alignment:
Q  84 tgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgatacactagattgt 182  Q
    |||||||||||||| |||||||| |||||| ||||| |||||||| || |||  ||||| ||||||||| | |||||||| ||| ||| |||||||| ||    
T  29759406 tgtcgtagcatatgcttctggtcatccacttgctttagaagtcatgggttctcacttttctaataagacaatagaacaatgtaaagatgcactagatcgt 29759307  T
Q  183 tacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnncttgacattgcttg 282  Q
    || |||||| ||| | || | || |||||||||| ||| ||||| ||||| ||||||||  | || |||||||||| ||       ||||||||||||||    
T  29759306 tatgaaaaagttcctcataaaaagatccaaacaacactacaaattagctttgatgctttggaagacgaagagaagtttg--tttttcttgacattgcttg 29759209  T
Q  283 ttgcttcaaaggat 296  Q
    |||||| |||||||    
T  29759208 ttgctttaaaggat 29759195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 298
Target Start/End: Original strand, 29469442 - 29469647
Alignment:
Q  92 catatgattctggtcttccactcgctttggaagtcattggtcttc-cttttttaataagaccaaagaacaatttaatgatacactagattgttacgaaaa 190  Q
    |||||| |||||| |||||||| |||||||||||||| |||  || ||||||||||||||| |  ||||||| |||  || || ||||| |||| ||||     
T  29469442 catatgcttctggccttccactggctttggaagtcataggttctcacttttttaataagacaattgaacaatgtaaatatgcattagatcgttatgaaag 29469541  T
Q  191 aattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnncttgacattgcttgttgcttca 290  Q
     |||| |||| | || |||||||| ||||| ||| | ||||| |||||||| |||||||||||||||| ||       ||||||||||| || |||||||    
T  29469542 gattcctgataaaaagatccaaacgatactacaacttagctttgatgctttgcaggaagaagagaagtctg--tttttcttgacattgcctgctgcttca 29469639  T
Q  291 aaggatat 298  Q
    ||||||||    
T  29469640 aaggatat 29469647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 296
Target Start/End: Complemental strand, 29673977 - 29673758
Alignment:
Q  76 ttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgatacac 174  Q
    ||||||| |||||||||||||| |||||||| |||||| |||||||||||||| || |||  ||||| ||||||||| | |||||| | ||||||| |||    
T  29673977 ttaaaacgtgtcgtagcatatgcttctggtcatccacttgctttggaagtcatcggttctcacttttctaataagacaatagaacagtgtaatgatgcac 29673878  T
Q  175 tagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnncttgac 274  Q
    ||||| ||||| ||| | ||| | || | |  |||||||| | ||| ||| |||| |  ||| |||| |||||||||||||||  ||       ||||||    
T  29673877 tagatcgttacaaaagagttcctcataacatgatccaaacgacactacaactgagttatgattctttgcaggaagaagagaagattg--tgtttcttgac 29673780  T
Q  275 attgcttgttgcttcaaaggat 296  Q
    ||||| ||||||||||||||||    
T  29673779 attgcatgttgcttcaaaggat 29673758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 296
Target Start/End: Complemental strand, 28479340 - 28479118
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||||||| ||  |||||||||| |||||| |||||||| |||||||||||||| || |||  ||||||||| ||||| | |||||||| |||| ||     
T  28479340 gttttaaaacgtgctgtagcatatgcttctggccttccacttgctttggaagtcataggttctcacttttttaacaagacaatagaacaatgtaattatg 28479241  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnnctt 271  Q
     ||||||| |||  ||||   ||| |||| | || |||||||||| ||| ||| ||||||| |||||||| ||||| ||||| || | ||       |||    
T  28479240 tactagatcgttgtgaaagggttcctgataaaaagatccaaacaacactacaagtgagctttgatgctttgcaggatgaagacaaatttg--tttttctt 28479143  T
Q  272 gacattgcttgttgcttcaaaggat 296  Q
    ||||||||||||||| |||||||||    
T  28479142 gacattgcttgttgcctcaaaggat 28479118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 296
Target Start/End: Complemental strand, 28490458 - 28490236
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||||||| ||  |||||||||| |||||| ||||||||||||||||||||||| || |||  ||||||||||||||| | |||  ||| |||   |     
T  28490458 gttttaaaacgtgcggtagcatatgcttctggccttccactcgctttggaagtcataggttctcacttttttaataagacaatagaggaatgtaaatgtg 28490359  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnnctt 271  Q
    |||||||| |||| ||||   ||| |||| | || |||||||| | ||| ||| |||||||  ||||||| || |||||||| |||| ||       |||    
T  28490358 cactagatcgttatgaaagggttcctgataaaaagatccaaacgacactgcaactgagctttaatgctttgcaagaagaagaaaagtctg--tttttctt 28490261  T
Q  272 gacattgcttgttgcttcaaaggat 296  Q
    |||||||||||||||||||||||||    
T  28490260 gacattgcttgttgcttcaaaggat 28490236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 296
Target Start/End: Complemental strand, 29791795 - 29791573
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||||||| ||  |||||||||| |||||| |||||||| |||||||||||||| || |||  ||||||||| ||||| | |||||||| |||| ||     
T  29791795 gttttaaaacgtgctgtagcatatgcttctggccttccacttgctttggaagtcataggttctcacttttttaacaagacaatagaacaatgtaattatg 29791696  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnnctt 271  Q
     ||||||| |||  ||||   ||| |||| | || |||||||||| ||| ||| ||||||| |||||||| ||||| ||||| || | ||       |||    
T  29791695 tactagatcgttgtgaaagggttcctgataaaaagatccaaacaacactacaagtgagctttgatgctttgcaggatgaagacaaatttg--tttttctt 29791598  T
Q  272 gacattgcttgttgcttcaaaggat 296  Q
    ||||||||||||||| |||||||||    
T  29791597 gacattgcttgttgcctcaaaggat 29791573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 296
Target Start/End: Complemental strand, 29802868 - 29802646
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||||||| ||  |||||||||| |||||| ||||||||||||||||||||||| || |||  ||||||||||||||| | |||  ||| |||   |     
T  29802868 gttttaaaacgtgcggtagcatatgcttctggccttccactcgctttggaagtcataggttctcacttttttaataagacaatagaggaatgtaaatgtg 29802769  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnnctt 271  Q
    |||||||| |||| ||||   ||| |||| | || |||||||| | ||| ||| |||||||  ||||||| || |||||||| |||| ||       |||    
T  29802768 cactagatcgttatgaaagggttcctgataaaaagatccaaacgacactgcaactgagctttaatgctttgcaagaagaagaaaagtctg--tttttctt 29802671  T
Q  272 gacattgcttgttgcttcaaaggat 296  Q
    |||||||||||||||||||||||||    
T  29802670 gacattgcttgttgcttcaaaggat 29802646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 296
Target Start/End: Complemental strand, 29695357 - 29695135
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||||||| ||  || ||||||| |||||| |||||||| |||||||||||||| || |||  ||||||||| ||||| | |||||||| |||| ||     
T  29695357 gttttaaaacgtgctgtcgcatatgcttctggccttccacttgctttggaagtcataggttctcacttttttaacaagacaatagaacaatgtaatcatg 29695258  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnnctt 271  Q
     ||||||| |||  ||||   ||| |||| | || |||||||||| ||| ||| ||||||| |||||||| ||||| ||||| || | ||       |||    
T  29695257 tactagatcgttgtgaaagggttcctgataaaaagatccaaacaacactacaagtgagctttgatgctttgcaggatgaagacaaatttg--tttttctt 29695160  T
Q  272 gacattgcttgttgcttcaaaggat 296  Q
    ||||||||||||||| |||||||||    
T  29695159 gacattgcttgttgcctcaaaggat 29695135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 296
Target Start/End: Original strand, 12589952 - 12590174
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaat-ttaatgat 170  Q
    |||||||||| || ||||||||||| |||||| |||||||| |||||||||||||| || |||  |||||||||||||||   ||| |||| | |||| |    
T  12589952 gttttaaaacgtgccgtagcatatgcttctggccttccactagctttggaagtcataggttctcacttttttaataagacagtagagcaatgtgaatg-t 12590050  T
Q  171 acactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnnct 270  Q
     |||||||| |||| |||| | ||| | || | || |||||||||| ||| ||| ||||||| |||||||| |||||||||||||||| ||       ||    
T  12590051 gcactagatcgttatgaaagagttcctcataaaaagatccaaacaacactacaactgagctttgatgctttgcaggaagaagagaagtctg--tttttct 12590148  T
Q  271 tgacattgcttgttgcttcaaaggat 296  Q
    ||| ||||||||||||||||||||||    
T  12590149 tgatattgcttgttgcttcaaaggat 12590174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 296
Target Start/End: Original strand, 615007 - 615229
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattggtcttccttttt-taataagaccaaagaacaatttaatgata 171  Q
    |||||||||| |||||||||||||| |||||||| |||||| |||||||||||||| |||  || ||||| ||||||||| | |||||||| | | |||     
T  615007 gttttaaaacgtgtcgtagcatatgcttctggtcatccacttgctttggaagtcatgggttctcatttttctaataagacaatagaacaatgtgaagatg 615106  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnnctt 271  Q
    || ||||| |||| |||| | ||| | || | || |||||||  | ||| ||  ||||||| ||||| || ||| ||||||| |||| ||       |||    
T  615107 cattagatcgttatgaaagagttcctcataacaagatccaaatgacactacagctgagctttgatgccttgcagaaagaagaaaagtttg--tttttctt 615204  T
Q  272 gacattgcttgttgcttcaaaggat 296  Q
    |||||||||||||||||||||||||    
T  615205 gacattgcttgttgcttcaaaggat 615229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 256
Target Start/End: Complemental strand, 238836 - 238652
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcat-tggtcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||| ||| |||||||||||||| |||||||| |||||||||||||||||| ||  | |||  ||||| ||| ||||| | |||||||| ||| |||     
T  238836 gttttagaacgtgtcgtagcatatgcttctggtcatccactcgctttggaagttatgagctctcacttttataaaaagacaatagaacaatgtaaagatg 238737  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaa 256  Q
    |||||||| |||  |||||| ||| | || | || |||||||  | ||| ||| | ||||  |||||||||||||||||||||||    
T  238736 cactagatcgttttgaaaaagttcctcataaaaagatccaaatgacactacaactaagctatgatgctttacaggaagaagagaa 238652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 296
Target Start/End: Complemental strand, 212092 - 211870
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||| ||| |||||||||||||| |||||||| |||||| |||||||| ||||| || |||  ||||| ||||||||| | |||||||| ||| | |     
T  212092 gttttagaacgtgtcgtagcatatgcttctggtcatccacttgctttggaggtcatgggttctcacttttataataagacaatagaacaatgtaaagttg 211993  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatgnnnnnnnctt 271  Q
    ||||||||  ||| |||||| ||| | || | || |||||||| | ||| ||| ||||||| ||||||||  ||||  |||| || | ||       |||    
T  211992 cactagatcattatgaaaaagttcctcataaaaagatccaaacgacactacaactgagctttgatgctttggaggacaaagataaatttg--tttttctt 211895  T
Q  272 gacattgcttgttgcttcaaaggat 296  Q
    |||||||||||||||||||||||||    
T  211894 gacattgcttgttgcttcaaaggat 211870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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