View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21478_low_12 (Length: 274)
Name: NF21478_low_12
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 19582836 - 19582585
Alignment:
| Q |
1 |
caaagcgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacgtttcatcgagctcatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19582836 |
caaagcgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacatttcatcgagctcatc |
19582737 |
T |
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| Q |
101 |
agatcctctaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccg |
200 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19582736 |
agaccctttaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccg |
19582637 |
T |
|
| Q |
201 |
gatacattagaatcatcagcaagtaataatccctctgttactccgtcaccat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19582636 |
gatacattagaatcatcagcaagtaataatccctctgttactccgtcaccat |
19582585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 19590749 - 19591000
Alignment:
| Q |
1 |
caaagcgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacgtttcatcgagctcatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19590749 |
caaagcgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacatttcatcgagctcatc |
19590848 |
T |
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| Q |
101 |
agatcctctaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccg |
200 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19590849 |
agaccctttaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccg |
19590948 |
T |
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| Q |
201 |
gatacattagaatcatcagcaagtaataatccctctgttactccgtcaccat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19590949 |
gatacattagaatcatcagcaagtaataatccctctgttactccgtcaccat |
19591000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 19586794 - 19586883
Alignment:
| Q |
163 |
catcagacccttcacccgtctcatcgggatctccaccggatacattagaatcatcagcaagtaataatccctctgttactccgtcaccat |
252 |
Q |
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||||||| ||||||||||||||||| || |||||||||||| |||||||||| | |||| |||||||| ||| || |||||||||||| |
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| T |
19586794 |
catcagaaccttcacccgtctcatcaggctctccaccggatttattagaatcaaccgcaacaaataatccttctattcctccgtcaccat |
19586883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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