View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21478_low_13 (Length: 257)
Name: NF21478_low_13
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 17542398 - 17542171
Alignment:
| Q |
13 |
aaaatcataaaaatgcatatgcctatgtttgttacaagttagcaagacccttagcatgtgaaagagtctgatagtgttgaggaagcatcaaaagccactg |
112 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
17542398 |
aaaatcataaaaatgcatatgcctat-----ttacaagttagcaagacccttagcatgtgaaagagtctgatagtgttgaggaagcatcagaagctactg |
17542304 |
T |
|
| Q |
113 |
aagttccatagattgtaaaatctggacttcaaggttcatggttagccaaattctttgagaagacagagcttgttgtgctaaaaagtcaagaacatgatgt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
17542303 |
aagttccatagattgtaaaatctggacttcaaggttcatggttagccaaattctttgagaagacagagcctgttgtgctaaaaagtcaagaacatgaggt |
17542204 |
T |
|
| Q |
213 |
tattatatctttcaagacaagttacaagttgatat |
247 |
Q |
| |
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||| |||||||||||||||||||||||||||||| |
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|
| T |
17542203 |
tat--tatctttcaagacaagttacaagttgatat |
17542171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 25455053 - 25455014
Alignment:
| Q |
13 |
aaaatcataaaaatgcatatgcctatgtttgttacaagtt |
52 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
25455053 |
aaaatcataaaaatacatatgtctatgtttgttacaagtt |
25455014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 39819725 - 39819686
Alignment:
| Q |
13 |
aaaatcataaaaatgcatatgcctatgtttgttacaagtt |
52 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
39819725 |
aaaatcatgaaaatacatatgcctatgtttgttacaagtt |
39819686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 46960657 - 46960618
Alignment:
| Q |
13 |
aaaatcataaaaatgcatatgcctatgtttgttacaagtt |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46960657 |
aaaatcataaaaatgcatatgcctatgtttgttacaagtt |
46960618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 13931926 - 13931965
Alignment:
| Q |
13 |
aaaatcataaaaatgcatatgcctatgtttgttacaagtt |
52 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
13931926 |
aaaatcataaaaatacatatgcctatgtttgttacaagtt |
13931965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 1227920 - 1227959
Alignment:
| Q |
13 |
aaaatcataaaaatgcatatgcctatgtttgttacaagtt |
52 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
1227920 |
aaaatcataaaaatacatatgcctatgcttgttacaagtt |
1227959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 12930983 - 12931022
Alignment:
| Q |
13 |
aaaatcataaaaatgcatatgcctatgtttgttacaagtt |
52 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12930983 |
aaaatcataaaaatgcatatggctatgtttgttacaagtt |
12931022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 13643099 - 13643059
Alignment:
| Q |
13 |
aaaatcataaaaatgcatatgcctatgtttgttacaagtta |
53 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
13643099 |
aaaatcataaaaatacatatgtctatgtttgttacaagtta |
13643059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 6204467 - 6204429
Alignment:
| Q |
13 |
aaaatcataaaaatgcatatgcctatgtttgttacaagt |
51 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
6204467 |
aaaatcataaaaatgcatatgcttatgtttcttacaagt |
6204429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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