View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21478_low_16 (Length: 232)
Name: NF21478_low_16
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 2020161 - 2020010
Alignment:
| Q |
1 |
accctaattccatgaaacattctgatccgatcgatcgcaatttttgaaatcttggatgagaagtactttgcaaaatgcacaattcaattagaagaaaatg |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2020161 |
acccaaattccatgaaacattctgatccgatcgatcgcaatgtttgaaatcttggatgagaagtactttgcaaaatgcacaattcaattagaagaaaatg |
2020062 |
T |
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| Q |
101 |
aagaagatcgagtgttgttggagcggaaggggtaagttggtgactggttttc |
152 |
Q |
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| T |
2020061 |
aagaagatcgagtgttgttggagcggaaggggtaagttggtgactggttttc |
2020010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 1947165 - 1947270
Alignment:
| Q |
43 |
tttgaaatcttggatgagaagtactttgcaaaatgcacaattcaattagaagaaaatgaagaagatcgagtgttgttggagcggaaggggtaagttggtg |
142 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1947165 |
tttgaaatcttcgatgagaagtactttgcaaaatgcacaattcaatcagaagaa---gaagaagatcgagtgttgttggagtggaaggggtaagttggtg |
1947261 |
T |
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| Q |
143 |
actggtttt |
151 |
Q |
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||||||||| |
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| T |
1947262 |
actggtttt |
1947270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 2019333 - 2019401
Alignment:
| Q |
147 |
gttttctccatgaaaatttgttattagtttacagcttataagtgaattcttttattttatgcttgtgaa |
215 |
Q |
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| T |
2019333 |
gttttctccatgaaaattagttattagtttacagcttataagtgaattctttaattttatgcttgtgaa |
2019401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 1962479 - 1962437
Alignment:
| Q |
147 |
gttttctccatgaaaatttgttattagtttacagcttataagt |
189 |
Q |
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| T |
1962479 |
gttttctccatgaaaatttgttcttagtttacagcttataagt |
1962437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 2015950 - 2015990
Alignment:
| Q |
147 |
gttttctccatgaaaatttgttattagtttacagcttataa |
187 |
Q |
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| T |
2015950 |
gttttctccataaaaatttgttcttagtttaccgcttataa |
2015990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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