View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21478_low_5 (Length: 506)
Name: NF21478_low_5
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 96 - 488
Target Start/End: Complemental strand, 32102960 - 32102568
Alignment:
| Q |
96 |
tttacagtcattcttaaagacatttgacctccttctgttaaagttataaggtcaaactcttactgaactcacacttctcgaacatattcacttttactag |
195 |
Q |
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| T |
32102960 |
tttacagtcattcttaaagacattagacctccttctattaaagttacaaggtgaaactcttactgaactcacacttctcgaacatattcactttgactag |
32102861 |
T |
|
| Q |
196 |
taatagcttatgtgataaagaattttataattttctctaacacaatgatttgatatacaggattctagtatggggtgatggatattacaatggatcaatt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32102860 |
taatagcttatgtgataaagaattttataattttctctaacacaatgatttgatatacaggattctagtatggggtgatggatattacaatggatcaatt |
32102761 |
T |
|
| Q |
296 |
aagactcgaaagacagtgcaaccaatggaggttagtgctgaggaagcatctctacaaagaagccagcaactaagagaactctatgaatcattgtctgccg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32102760 |
aagactcgaaagacagtgcaaccaatggaggttagtgctgaggaagcatctctacaaagaagccagcaactaagagaactctatgaatcattgtctgccg |
32102661 |
T |
|
| Q |
396 |
gagagactaatccaccaactcgtcgtccatgtgcttccttgtcacctgaggacctaacagaatctgaatggttctatttgatgtgtgtctctt |
488 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32102660 |
gagagacaaatccaccaactcgtcgtccatgtgcttccttgtcacctgaggacctaacagaatctgaatggttctatttgatgtgtgtctctt |
32102568 |
T |
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