View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21478_low_6 (Length: 477)
Name: NF21478_low_6
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 458
Target Start/End: Complemental strand, 45548956 - 45548509
Alignment:
| Q |
11 |
cacagaaccaaaaatccagccacctgtcgctgacagtactgaataccctccttcttctggaagccgtgatattgatcagtttgtgccacacctctctgat |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548956 |
cacagaaccaaaaatccagccacctgttgctgacagtactgaataccctccttcttctggaagccgtgatattgatcagtttgtgccacacctctctgat |
45548857 |
T |
|
| Q |
111 |
gcaacagaaactccgaatgaatatcctcaggtaacagtatccgaaaacatcaatagaaaccaagaaaatcccccagaaactagagaaaatttcgatacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
45548856 |
gcaacagaaactccgaatgaatatcctcaggtaacagtatccaaaaacatcaatagaaaccaagaaaatcccttggaaattagagaaaattttgatacca |
45548757 |
T |
|
| Q |
211 |
tcacaaacaccattgagaaacaatcaggttatgaagaaccagtggagacgcaaccaaaacaaaaaggttacacagatgaaattgaaatctcgtctgcgga |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548756 |
tcacaaacaccgttgagaaacaatcaggttatgaagaaccagtggagacgcaaccaaaacaaaaaggttacacagatgaaattgaaatctcgtctgcgga |
45548657 |
T |
|
| Q |
311 |
agaagctgataaaactctccctcctgaaaatgacgaagcttctaagctcggaaatgatgagaaagttgagcatcaaaaaagtgagaatggaaataacgtt |
410 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548656 |
agaagctgataaaactctccctcctgaaaatgacgaagcttctaagctcggaaatgatgagaaagttgagcatcaaaaaagtgagaatggaaataacgtt |
45548557 |
T |
|
| Q |
411 |
ggttattctcttactgagaaattagctccagtttatggaaaggttgca |
458 |
Q |
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| T |
45548556 |
ggttattctcttactgagaaattagctccagtttatggaaaggttgca |
45548509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 45544114 - 45544006
Alignment:
| Q |
83 |
tgatcagtttgtgccacacctctctgatgcaacagaaactccgaatgaatatcctcaggtaacagtatccgaaaacatcaatagaaaccaagaaaatccc |
182 |
Q |
| |
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||||||||||| ||||||| || || ||||||||||||||| |||||||||||||| || ||||| |||| | | ||||||| |||||| |||| |||| |
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| T |
45544114 |
tgatcagtttgcgccacacttcgctaatgcaacagaaactcagaatgaatatcctcgggaaacagcatccacagatatcaatataaaccatgaaattccc |
45544015 |
T |
|
| Q |
183 |
ccagaaact |
191 |
Q |
| |
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|||||||| |
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| T |
45544014 |
tcagaaact |
45544006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 45545017 - 45544954
Alignment:
| Q |
83 |
tgatcagtttgtgccacacctctctgatgcaacagaaactccgaatgaatatcctcaggtaaca |
146 |
Q |
| |
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||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
45545017 |
tgatcagtttgtgccacacttcactgatgcaacaaaaactcagaatgaatatcctcaggaaaca |
45544954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 45549808 - 45549754
Alignment:
| Q |
83 |
tgatcagtttgtgccacacctctctgatgcaacagaaactccgaatgaatatcct |
137 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| |
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|
| T |
45549808 |
tgatcagtttgtgccacacttctctgatgcaacaaaaactcagaatgaatatcct |
45549754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 45543963 - 45543850
Alignment:
| Q |
105 |
tctgatgcaacagaaactccgaatgaatatcctcaggtaacagtatccgaaaacatcaatagaaaccaagaaaatcccccagaaactagagaaaatttcg |
204 |
Q |
| |
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|||||||||||||||| || ||||||||||||||| | |||| ||||| | | |||||||||||||| |||| |||| |||||||| ||||| |||| |
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| T |
45543963 |
tctgatgcaacagaaattcagaatgaatatcctcaagaaacaacatccgcagatatcaatagaaaccatgaaattccctcagaaactgaagaaactttca |
45543864 |
T |
|
| Q |
205 |
ataccatcacaaac |
218 |
Q |
| |
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| ||| |||||||| |
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| T |
45543863 |
acaccttcacaaac |
45543850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 45543426 - 45543349
Alignment:
| Q |
105 |
tctgatgcaacagaaactccgaatgaatatcctcaggtaacagtatccgaaaacatcaatagaaaccaagaaaatccc |
182 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||| | |||||||||| | | |||||||||||||| |||| |||| |
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| T |
45543426 |
tctgatgcagcagaaactcagagtgaatatcctcaagaaacagtatccacagatatcaatagaaaccatgaaattccc |
45543349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 45543754 - 45543702
Alignment:
| Q |
317 |
tgataaaactctccctcctgaaaatgacgaagcttctaagctcggaaatgatg |
369 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| ||||||||||| | ||||||| |
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| T |
45543754 |
tgataaaactctcccttttgaaaatgatgaaacttctaagctcagtaatgatg |
45543702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 21846723 - 21846614
Alignment:
| Q |
148 |
tatccgaaaacatcaatagaaaccaagaaaatcccccagaaactagagaaaatttcgataccatcacaaacaccattgagaaacaatcaggttatgaaga |
247 |
Q |
| |
|
|||| ||||| |||||||||| |||||||| |||| | |||||||||||||| ||| ||||||| ||||||||| |||| |||||||||||||||||||| |
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| T |
21846723 |
tatctgaaaatatcaatagaagccaagaaattccctcggaaactagagaaaacttcaataccattacaaacaccgttgaaaaacaatcaggttatgaaga |
21846624 |
T |
|
| Q |
248 |
accagtggag |
257 |
Q |
| |
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|||||||||| |
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|
| T |
21846623 |
accagtggag |
21846614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 19671274 - 19671315
Alignment:
| Q |
205 |
ataccatcacaaacaccattgagaaacaatcaggttatgaag |
246 |
Q |
| |
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|||||||| ||| |||||||||||||||| |||||||||||| |
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| T |
19671274 |
ataccatcccaaccaccattgagaaacaaccaggttatgaag |
19671315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 446
Target Start/End: Original strand, 36623543 - 36623592
Alignment:
| Q |
397 |
atggaaataacgttggttattctcttactgagaaattagctccagtttat |
446 |
Q |
| |
|
||||||| ||| ||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
36623543 |
atggaaagaactttgcttactctcttactgagaaattagctccagtttat |
36623592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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