View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21478_low_7 (Length: 472)
Name: NF21478_low_7
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 46782845 - 46783194
Alignment:
| Q |
15 |
gaagcaaaggtaatgaaggagttgaaattggagtataactctctctgtattgcactatagcagtggttgtggtgttatcaaactctactcttgcgttatc |
114 |
Q |
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| T |
46782845 |
gaagaaaaggtaatgaagaagttgaaattggagtataactctctctgtattgcactatagcagtggttgtggtgttatcaaactctactcttgcgttatc |
46782944 |
T |
|
| Q |
115 |
agttgaatatgctcttgcagccatatagtagtgactaggttcttggttggcatgcaacaatacatccattgtttgtcctggtgatatgcaaatgtaatct |
214 |
Q |
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| T |
46782945 |
agttgaatatgctcttgcagccatatagtagtgactaggttcttggttggcatgtaacaatacatccattgtttgtcctggtgatatgcaaatgtaatct |
46783044 |
T |
|
| Q |
215 |
cttgtcattggttttgtgtacatagcatcagcaccaacaacagtgagtttatgtttagaaattgagaaaaagagaatgagattcattgcagcattaacaa |
314 |
Q |
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| T |
46783045 |
ctcgtcattggttttgtgtacatagcatcagcaccaacaacagtgagtttatgtttagaaattgagaaaaagagaatgagattcattgcagcattaacaa |
46783144 |
T |
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| Q |
315 |
cacgtagaagatatgtccttccctgttctactcttagcttgaatgtttct |
364 |
Q |
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| T |
46783145 |
cacgtagaagatatgtccttccctgttctactcttagcttgaatgtttct |
46783194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 364
Target Start/End: Original strand, 46790297 - 46790636
Alignment:
| Q |
22 |
aggtaatgaaggagttgaaattggagtataactctctctgtattgcactatagcagtggttgtggtgttatcaaactctactcttgcgttatcagttgaa |
121 |
Q |
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| T |
46790297 |
aggtaatgaaggagttgaaagtggtgtatgactccaactgtattgtactataccagtggctgtggtattatcaaactctaatcctgctg---cacttgaa |
46790393 |
T |
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| Q |
122 |
tatgctcttgcagccatatagtagtgactaggttcttggttggcatgcaacaatacatccattgtttgtcctggtgatatgcaaatgtaatctcttgtca |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46790394 |
tatgctcttgcagccatatagtagtgactaggttcttggttggcatgtaacaatacatccattgtttgtcctggtgatatgcaaatgtaatctctcgtca |
46790493 |
T |
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| Q |
222 |
ttggttttgtgtacatagcatcagcaccaacaacagtgagtttatgtttagaaattgagaaaaagagaatgagattcattgcagcattaacaacacgtag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46790494 |
ttggttttgtgtacatagcatcagcaccaacaacagtgagtttatgtttagaaattgagaaaaagagaatgagattcattgcagcattaacaacacgtag |
46790593 |
T |
|
| Q |
322 |
aagatatgtccttccctgttctactcttagcttgaatgtttct |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46790594 |
aagatatgtccttccctgttctactcttagcttgaatgtttct |
46790636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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