View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21478_low_8 (Length: 374)
Name: NF21478_low_8
Description: NF21478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21478_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 55385179 - 55384825
Alignment:
| Q |
1 |
tgagaacattgctagcaggaagcttaacaaatgcagatgagaagttctcaaagaagtagctctgatccatatcaaacctcatgacaatgggtgcagttcg |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55385179 |
tgagaacattgctagcagaaagcttaacaaatgcagatgagaagttctcaaagaagtagctctgatccatagcaaacctcatgacaatgggtgcagttcg |
55385080 |
T |
|
| Q |
101 |
tggatctatagaaatgatcgagtcaataccaagcaaacctcttcccatcataatgtctcggtaatattgattgtcaaatattgttggggtcatgtcatta |
200 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55385079 |
tggatctctagaaatgctcgagtcaataccaagcaaacctcttcccatcataatgtctcggtaatattgattgtcaaatattgttggggtcatgtcatta |
55384980 |
T |
|
| Q |
201 |
ggcacaaatgttaggtttgtcataggaataacagttgggcatgctagtcttagtgaggtttcataacccaaattcatattgtttcctatctgttgatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55384979 |
ggcacaaatgttaggtttgtcataggaataacagttgggcatgctagtcttagtgaggtttcataacccaaattcatattgtttcctatctgttgatttt |
55384880 |
T |
|
| Q |
301 |
gattatacaatctgccaacaatgcttaagcagtgtccaacacctaatgtatgtgc |
355 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55384879 |
gattatacaatctgccaacaatgcttaagcagtgtccaacacctaatgtatgtgc |
55384825 |
T |
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