View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2147_low_1 (Length: 468)
Name: NF2147_low_1
Description: NF2147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2147_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Complemental strand, 181280 - 180838
Alignment:
| Q |
9 |
gacatcatcagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
181280 |
gacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgat |
181181 |
T |
|
| Q |
109 |
attgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
181180 |
attgagacatataatgaaaggtgtagagatcactgttactggaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
181081 |
T |
|
| Q |
209 |
aaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
181080 |
caattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagta |
180981 |
T |
|
| Q |
309 |
atattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaa |
408 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
180980 |
atatttggggtagggagggtaatagagccaacatgtgaaatattcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaa |
180881 |
T |
|
| Q |
409 |
gctgcatattgttcagatttgatgttatacgatgactggctct |
451 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
180880 |
gctgcatattgttcagatttgatgttatatgatgactggctct |
180838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 9 - 450
Target Start/End: Complemental strand, 1701707 - 1701266
Alignment:
| Q |
9 |
gacatcatcagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
1701707 |
gacatcatttgtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaagcaagagcagtgggttgat |
1701608 |
T |
|
| Q |
109 |
attgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
208 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1701607 |
attgagacttaggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttacacagaaaaaggtagggtg |
1701508 |
T |
|
| Q |
209 |
aaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagta |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1701507 |
aaattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagta |
1701408 |
T |
|
| Q |
309 |
atattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
1701407 |
gtattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttctggaccgtcatattcggagtgca |
1701308 |
T |
|
| Q |
409 |
gctgcatattgttcagatttgatgttatacgatgactggctc |
450 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1701307 |
gctgcatattgttcagatttgatgttatatgatgactggctc |
1701266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 5400124 - 5400031
Alignment:
| Q |
331 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcag |
424 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||||||||| |
|
|
| T |
5400124 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctcgggaccatcatattctgaatggatgtgcatattgttcag |
5400031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 336 - 429
Target Start/End: Original strand, 26593053 - 26593146
Alignment:
| Q |
336 |
ccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttg |
429 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
26593053 |
ccaacatgggaaattttcaaacctgtaccatcaccaatttgcacttcttctgggccatcatattcagagtgaatgtgcatattattcagatttg |
26593146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 3541121 - 3541028
Alignment:
| Q |
331 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcag |
424 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||||||||||| || || | |||||||||||||| |
|
|
| T |
3541121 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctctggaccatcatattctgaatggatgtgcatattgttcag |
3541028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University