View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2147_low_4 (Length: 287)
Name: NF2147_low_4
Description: NF2147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2147_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 5586918 - 5587186
Alignment:
| Q |
1 |
aaacacttcatgtttcataatatggttaagttaaaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586918 |
aaacacttcatgtttcataatatggttaagttaaaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcgg |
5587017 |
T |
|
| Q |
101 |
aaagtcgattccataaggattgtaattagattttgcagaggtaggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5587018 |
aaagtcgattccatagggattgtaattagattttgcagaggtaggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaa |
5587117 |
T |
|
| Q |
201 |
ggcacttgggatttcccattgacacattgttgcaaatagtttgcagacaagaaaacaataagaactacc |
269 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5587118 |
ggcacttgggatttcccattgacacattgttgcaaatagtttgcagaaaagaaaacaataagaactacc |
5587186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 28 - 265
Target Start/End: Original strand, 5573414 - 5573651
Alignment:
| Q |
28 |
aagttaaaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccataaggattgtaatt |
127 |
Q |
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||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||| |
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| T |
5573414 |
aagttgaaagaatgttacttattatgtcaattgcagttctaccgttggtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaatt |
5573513 |
T |
|
| Q |
128 |
agattttgcagaggtaggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttgggatttcccattgacacat |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
5573514 |
agattttgcagaggtaggaaggttattgttgtttccactatcagataaagaatctccaaagataaatacacaaggcacttgagatttcccattgacacat |
5573613 |
T |
|
| Q |
228 |
tgttgcaaatagtttgcagacaagaaaacaataagaac |
265 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
5573614 |
tgtttaaaatagtttgcagacaagaaaacaataagaac |
5573651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 5593151 - 5593405
Alignment:
| Q |
1 |
aaacacttcatgtttcataatatggttaagttaaaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcgg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
5593151 |
aaacacttcatgtttcataatatggataagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcgg |
5593250 |
T |
|
| Q |
101 |
aaagtcgattccataaggattgtaattagattttgcagag---gtaggaaggttattgttgtttccactatcagataaagagtctccaaagataaataga |
197 |
Q |
| |
|
|||||||| || |||||||||||||| ||| ||| |||| | ||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||| |
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| T |
5593251 |
gaagtcgatcccgtaaggattgtaatttgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaaga |
5593350 |
T |
|
| Q |
198 |
caaggcacttgggatttcccattgacacattgttgcaaatagtttgcagacaaga |
252 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
5593351 |
caaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaaga |
5593405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 37 - 265
Target Start/End: Original strand, 5576585 - 5576813
Alignment:
| Q |
37 |
gaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccataaggattgtaattagattttgc |
136 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
5576585 |
gaatgctacttattatgtcaattgaagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcaattccataaggtttgtaattagattttgc |
5576684 |
T |
|
| Q |
137 |
agaggtaggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttgggatttcccattgacacattgttgcaaa |
236 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||| |
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| T |
5576685 |
agaggtgggaaggttgttattgtttccactatcagataaagaatctccaaagataaaaagacatggcacttgggattttccattgacaaattgttgcaaa |
5576784 |
T |
|
| Q |
237 |
tagtttgcagacaagaaaacaataagaac |
265 |
Q |
| |
|
||||||||||| |||| || ||||||||| |
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|
| T |
5576785 |
tagtttgcagaaaagataagaataagaac |
5576813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 262
Target Start/End: Complemental strand, 12051943 - 12051711
Alignment:
| Q |
34 |
aaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcg--gaaag--tcgattccataaggattgtaattag |
129 |
Q |
| |
|
|||||| |||||| ||||||| ||||| ||||||||||||||||||||||| |||| ||| | || ||| | |||||||||||||| ||||||| | |
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|
| T |
12051943 |
aaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaa |
12051844 |
T |
|
| Q |
130 |
attttgcagaggtaggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttgggatttcccattgacacattg |
229 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||| ||| ||||| ||||| ||| ||||| || |
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| T |
12051843 |
attaagcaaaggtaggaaggttattgttgttttcactatcatataaagagtccccaaagataaacagactaggtacttgatatttctcatagacactgtg |
12051744 |
T |
|
| Q |
230 |
ttgcaaatagtttgcagacaagaaaacaataag |
262 |
Q |
| |
|
||| ||||||||||| |||| ||||| |||||| |
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| T |
12051743 |
ttgtaaatagtttgcggacatgaaaagaataag |
12051711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 5582835 - 5582913
Alignment:
| Q |
174 |
aaagagtctccaaagataaatagacaaggcacttgggatttcccattgacacattgttgcaaatagtttgcagacaaga |
252 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
5582835 |
aaagaatctccaaagataaaaagacaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaaga |
5582913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 12059381 - 12059228
Alignment:
| Q |
17 |
ataatatggttaagttaaaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccataa |
116 |
Q |
| |
|
||||||| ||||| || ||||||||||||| ||||||||||||| ||||||||| ||||||||||||| | || | ||||| |||||||||||||| |
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|
| T |
12059381 |
ataatatagttaaattgaaagaatgttacttattatgtcaattgcagttcgaccattggtaaatcttctggctgcactgatcggggagtcgattccataa |
12059282 |
T |
|
| Q |
117 |
ggattgtaattagattttgcagaggtaggaaggttattgttgtttccactatca |
170 |
Q |
| |
|
|| || |||| | ||| | | ||||||||||||||||||||||| | |||||| |
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|
| T |
12059281 |
ggtttctaatcaaattcagtaaaggtaggaaggttattgttgttttccctatca |
12059228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 12064775 - 12064683
Alignment:
| Q |
34 |
aaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccataaggattgtaat |
126 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||| || ||||| |||| ||||||||||| ||||||| |
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|
| T |
12064775 |
aaagaatgttacttattatgtcaattgtagttcgaccattggtaaatcttccggttgttccgatcggggagtcaattccataaggtttgtaat |
12064683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 5615963 - 5616071
Alignment:
| Q |
100 |
gaaagtcgattccataaggattgtaattagattttgcagaggtaggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagaca |
199 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||| ||| |||| || |||||||||||| | ||||| || ||||||||||| ||||||| || |
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|
| T |
5615963 |
gaaagtcgacgccgtacggattgtaattagattttgcattggttcgaagattgttgttgtttccattgtcagacaaggagtctccaaatataaatatgca |
5616062 |
T |
|
| Q |
200 |
aggcacttg |
208 |
Q |
| |
|
||||||||| |
|
|
| T |
5616063 |
aggcacttg |
5616071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 5582732 - 5582793
Alignment:
| Q |
14 |
ttcataatatggttaagttaaaagaat-gttactgattatgtcaattgaagttcgaccgttg |
74 |
Q |
| |
|
|||||||||| | ||| || ||||||| |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
5582732 |
ttcataatatagataaattgaaagaattgttacttattatgtcaattgcagttcgaccgttg |
5582793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 36357883 - 36358051
Alignment:
| Q |
42 |
ttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccataaggattgtaattagattttgcagagg |
141 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||| || || || ||||| || || |||||||| |||||||| ||| ||| || |
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|
| T |
36357883 |
ttactgattatgtcaattgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcgg |
36357982 |
T |
|
| Q |
142 |
taggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttggg |
210 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||| |||||||| || || ||||| || ||||||| |
|
|
| T |
36357983 |
tagctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
36358051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 7017550 - 7017710
Alignment:
| Q |
48 |
attatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccataaggattgtaattagattttgcagaggtaggaa |
147 |
Q |
| |
|
|||||||||||||| ||| || || ||||| ||||| ||||| || ||||||| ||||| ||||| || ||||||||| |||||||| ||| || |
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| T |
7017550 |
attatgtcaattgatgttaatccattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgcagttgtaacaa |
7017649 |
T |
|
| Q |
148 |
ggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttg |
208 |
Q |
| |
|
| | ||||||||||||||| |||||||||||||| ||||| | ||| |||||||||||||| |
|
|
| T |
7017650 |
gatcattgttgtttccactgtcagataaagagtcaccaaaaacaaaaagacaaggcacttg |
7017710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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