View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21480_high_1 (Length: 612)
Name: NF21480_high_1
Description: NF21480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21480_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 33 - 594
Target Start/End: Original strand, 25735325 - 25735888
Alignment:
| Q |
33 |
ctcttgtaagatggggatgtttagaagtaaaagaaaaatgcttatgagtttttgaaggtagctgaggatttgatcaagaactatggtagcaagggaatta |
132 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25735325 |
ctcttgtaagatggggatgtttagaagtagaagaaaaatgcttatgagtttttgaaggtagctgaggatttgatcaagaactatggtagcaagagaatta |
25735424 |
T |
|
| Q |
133 |
ttacttttggtgatggtgatgcatttgagaaactgaaaaatagttgaatttcaggtccttttttgaagggaatttggtgcattataaagctttgttggaa |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25735425 |
ttacttttggtgatggtgatgcatttgagaaactgaaaaatagttgaatttcaggtccttttttgaagggaatttggtgcattataaagctttgttggaa |
25735524 |
T |
|
| Q |
233 |
tcaattgagtcgcaattttccacaaaattctcagaagcaagaattgcatgtgaaattctgtttgtggcaccttgtatatcttctcttgattggttataaa |
332 |
Q |
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| T |
25735525 |
tcaattgagttgcaattttccacaaaattctcagaagcaagaattgcatgtgaaattctgtttgtggcaccttgtatatcttctcttgattggttacaaa |
25735624 |
T |
|
| Q |
333 |
catgggaagagataaaaagtgatgggtgtgttaaagatgagattagcatagaagatggaagattgattaaaaatgttttgatg--gaagtcagagaaatg |
430 |
Q |
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| T |
25735625 |
catgggaagagataaaaagtgatgggtgtgttaaagatgagattagcatagaagatggaagattgattaaaaatgttttgatggagaagtcagagaaatg |
25735724 |
T |
|
| Q |
431 |
ttgagaggaaatgatagttcatatcaagcaagagttgaaggagaaaatgagaatcaccttgttttggaatggaaaggaactcaactgttaagattttcaa |
530 |
Q |
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| T |
25735725 |
ttgagaggaagtgatagttcatatcaagcaagaattgaaggagaaaatgagaatcaacttgttttggaatggaaaggaagtcaactgttaagattttcaa |
25735824 |
T |
|
| Q |
531 |
tttggaaaaattagtctaggaaattaggagtgaacagtacttgtttagttttttaagtattcct |
594 |
Q |
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| T |
25735825 |
tttggaaaaattagtctaggaaattaggagttaacagtacttttttagttttttaagtattcct |
25735888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 43 - 588
Target Start/End: Original strand, 25715104 - 25715651
Alignment:
| Q |
43 |
atggggatgtttagaagtaaaagaaaa-atgcttatgagtttttgaaggtagctgaggatttgatcaagaactatggtagcaagggaattattacttttg |
141 |
Q |
| |
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||||| ||| ||||||| | ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25715104 |
atgggaatggttagaagaagaagaaaacatgcttacgagtttttaaaggtagctgaggatttgatcaagaactatggtatcaagggaattattacttttg |
25715203 |
T |
|
| Q |
142 |
gtgatggtgatgcatttgagaaactgaaaaatagtt-gaatttcaggtccttttttgaagggaatttggtgcattataaagctttgttggaatcaattga |
240 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25715204 |
gtgatggtgatgcatttgagaaactgaaaaatagtttgaatttcatgtcattttttgaagggaatttggtgcattataaggctttgttggaatcaattga |
25715303 |
T |
|
| Q |
241 |
gtcgcaattttccacaaaattctcagaagcaagaattgcatgtgaaattctgtttgtggcaccttgtatatcttctcttgattggttataaacatgggaa |
340 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25715304 |
gtcacaattttcaacaaaattctcagaagcaagaattgcatgtgaagtgttgtttgtggcaccttgtatatcttctcttgattggttacaaacatgggaa |
25715403 |
T |
|
| Q |
341 |
gagataaaaagtgatgggtgtgttaaagatgagattagcatagaagatggaagattgattaaaaatgttttgatggaagtcagagaaatgttgagaggaa |
440 |
Q |
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||||| ||||||||||| | |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25715404 |
gagatgaaaagtgatggatatgttaaagatgagattagcatagatggtggaagattgagcaaaaatgttttgatggaagtcagagaaatgttgagaggaa |
25715503 |
T |
|
| Q |
441 |
atgatagttcatatcaagcaagagttgaaggagaaaatgagaatcaccttgttttggaatggaaaggaactcaactgttaagattttcaatttggaaaaa |
540 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||| ||||||||||| |
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| T |
25715504 |
gtgatagttcatatcaagctagaattgaaggagaaaatgagaatcaacttgtgttggaatggaaaggaagtcaactattaagattttctatttggaaaaa |
25715603 |
T |
|
| Q |
541 |
ttagtctaggaaattaggagtgaacagtacttgtttagttttttaagt |
588 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
25715604 |
ttagtctaggaaattaggagtgaacattacttttttagttttttaagt |
25715651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 33 - 278
Target Start/End: Original strand, 25743445 - 25743690
Alignment:
| Q |
33 |
ctcttgtaagatggggatgtttagaagtaaaagaaaaatgcttatgagtttttgaaggtagctgaggatttgatcaagaactatggtagcaagggaatta |
132 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25743445 |
ctcttgtaagatggggatgtttagaagtagaagaaaaatgcttatgagtttttgaaggtagctgaggatttgatcaagaactatggtagcaagggattta |
25743544 |
T |
|
| Q |
133 |
ttacttttggtgatggtgatgcatttgagaaactgaaaaatagttgaatttcaggtccttttttgaagggaatttggtgcattataaagctttgttggaa |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25743545 |
ttacttttggtgatggtgatgcatttgagaaactgaaaaatagttgaatttcaggtccttttttgaagggaatttggtgcattatagagctttgttggaa |
25743644 |
T |
|
| Q |
233 |
tcaattgagtcgcaattttccacaaaattctcagaagcaagaattg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25743645 |
tcaattgagtcgcaattttccacaaaattctcagaagcaagaattg |
25743690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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