View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21480_low_2 (Length: 318)
Name: NF21480_low_2
Description: NF21480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21480_low_2 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 6199491 - 6199698
Alignment:
| Q |
1 |
gtttgaacttgattatattgtagataatatgcattacatgaagtcctattatagtatataaatatatgctttatgtagatggctgatcataactaattac |
100 |
Q |
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| T |
6199491 |
gtttgaacttgattatattgtagataatatgccttacatgaattcctattatagtata--aatatatgctttatgtagatggctgatcataactaactac |
6199588 |
T |
|
| Q |
101 |
tttaagaataatgtgtttcaatcttataaatacgaatgttgcatcc--tatggtcaatcgatcatggatttagctttacagcttttcaatttaactagta |
198 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6199589 |
tttgagaataatgtgtttcaatcttataaatatgaatgttgcatcctatatggtcaatcgatcatggatttagctttacaacttttcaatttaactagta |
6199688 |
T |
|
| Q |
199 |
atatatgttg |
208 |
Q |
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|||||||||| |
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| T |
6199689 |
atatatgttg |
6199698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 9067207 - 9067297
Alignment:
| Q |
1 |
gtttgaacttgattatattgtagataatatgcattacatgaagtcctattatagtatataaatatatgctttatgtagatggctgatcataac |
93 |
Q |
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| T |
9067207 |
gtttgaacttgattatattgtacataatatgccttacatgaattcctattatag--tataaatatatgctttatgtagatggctgatcataac |
9067297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 17535768 - 17535503
Alignment:
| Q |
1 |
gtttgaacttgattatattgtagataatatgcattacatgaagtcctattatagtatataaatatatgctttatgtagatggctgatcataactaattac |
100 |
Q |
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| T |
17535768 |
gtttgaacttgattacaatgtagataatatgccttacatgaattcctattatagtata--aatatatgctttatgtagatggctggtcataactaattac |
17535671 |
T |
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| Q |
101 |
tttaagaataatgtgtttcaatcttataaatacgaatgttgcatcctatggtcaatcgatcatggatttagctttacagcttttcaatttaactagtaat |
200 |
Q |
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| T |
17535670 |
tttgataataatgtgtttcattcttataattatgtatattgaatcctatggtcaatcgattatggatttagctttacaacttttcaatttaactagtaat |
17535571 |
T |
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| Q |
201 |
atatgttg----------catgcttcgtgaacctagttgagtttgtcaattggagaggtgtttttgtg |
258 |
Q |
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| T |
17535570 |
atatgttgtggtttggctcatgcttcatgaacctaattgagtttgttagttggagaggtgtttgtgtg |
17535503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 26907745 - 26907475
Alignment:
| Q |
1 |
gtttgaacttgattatattgtagataatatgcattacatgaagtcctattatagtatataaatatatgctttatgtagatggctgatcataactaattac |
100 |
Q |
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||||||| ||||||| | || ||||||||||| | ||||||| ||||||||| ||||| ||| ||||||||| ||| ||| ||||||||||||||||| |
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| T |
26907745 |
gtttgaatttgattacaatgaagataatatgcctaacatgaattcctattattgtata--aatggatgctttatctaggtggttgatcataactaattac |
26907648 |
T |
|
| Q |
101 |
tttaagaataatgtgtttcaatcttataaatacgaatgttgcatcctatggtcaatcgatcatggatttagctttacagcttttcaatttaactagtaat |
200 |
Q |
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||| | ||||||||||||||||||| ||| || | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26907647 |
tttgataataatgtgtttcaatcttgtaattatgtatattgcatcctatggtcaatcgattatggatttagctttacagcttttcaatttaactagtaat |
26907548 |
T |
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| Q |
201 |
atatgttg-----------catgcttcgtgaacctagttgagtttgtcaattggagaggtgtttttgtgcagc |
262 |
Q |
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| T |
26907547 |
atatgttgtggtttggcctcatgcttcgtgaacctaattgagtttgttagttggagaggtgtttttgtgcagc |
26907475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 804 - 535
Alignment:
| Q |
1 |
gtttgaacttgattatattgtagataatatgcattacatgaagtcctattatagtatataaatatatgctttatgtagatggctgatcataactaattac |
100 |
Q |
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||||||||||||||| | |||| ||||||||| ||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
804 |
gtttgaacttgattacagtgta-ataatatgccttacatgaattcctattattgtata--aatgtatgctttatgtagatggctgatcataactaattac |
708 |
T |
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| Q |
101 |
tttaagaataatgtgtttcaatcttataaatacgaatgttgcatcctatggtcaatcgatcatggatttagctttacagcttttcaatttaactagtaat |
200 |
Q |
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||| | ||||||||||||||||||||||| || | || ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
707 |
tttgataataatgtgtttcaatcttataattatgtatattgcatcctgtggtcaatcgagtacagatttagctttacagcttttcaatttaactagtaat |
608 |
T |
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| Q |
201 |
atatgttg-----------catgcttcgtgaacctagttgagtttgtcaattggagaggtgtttttgtgcagc |
262 |
Q |
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|||||||| |||| |||||||||||| |||||||||| | |||||||||||||| |||||||| |
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| T |
607 |
atatgttgtggtttggcctcatgtttcgtgaacctaattgagtttgttagttggagaggtgtttctgtgcagc |
535 |
T |
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