View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21482_high_3 (Length: 238)
Name: NF21482_high_3
Description: NF21482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21482_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7340512 - 7340731
Alignment:
| Q |
1 |
acctacaagagaacagacacccatatagaagataaaatttgtcgtgtgggaatcatnnnnnnngagaattaaattaaacattagtgtagttagtgggtat |
100 |
Q |
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| T |
7340512 |
acctacaagagaacagacacccatatagaagataaaatttgtcgtgtgggaatcataaaaaaagagaattaaattaaacattagtgtagt----gggtat |
7340607 |
T |
|
| Q |
101 |
gtatggacatatgctacacgagtgagaaaatatgggtcaacagcacatgcaaacaaagaaagtgtgatgcacaaatggggtacgaatcttctaccagcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340608 |
gtatggacatatgctacacgagtgagaaaatatgggtcaacagcacatgcaaacaaagaaagtgtgatgcacaaatggggtacgaatcttctaccagcta |
7340707 |
T |
|
| Q |
201 |
gcacaaacattacccgggaaaaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
7340708 |
gcacaaacattacccgggaaaaat |
7340731 |
T |
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