View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21482_low_1 (Length: 358)
Name: NF21482_low_1
Description: NF21482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21482_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 35509554 - 35509887
Alignment:
| Q |
8 |
ccaagaaaataattaacatattaatattaccattnnnnnnntctaaatacattctaattaagatgtcaagtttattaagagattttacctcatataaaag |
107 |
Q |
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| T |
35509554 |
ccaacaaaataattaacatattaatattaccattaaaaaaatctgaatacattctaattaagatgtcaagtttattaagagattttacctcatataaaag |
35509653 |
T |
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| Q |
108 |
atgaattttatttaatgtgtatgactcaagaccaaactattgatcacttattttaaatgactgatttaaatgctcacacaacgttgaaaagtgaaaaatt |
207 |
Q |
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| T |
35509654 |
atgaattttatttaatgtgtatgactcaagaccaaactattgatcacttattttaaatgactgatttaaatgctcacacaacgttgaaaagtgaaaaatt |
35509753 |
T |
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| Q |
208 |
gtaaggttgaactcatgtccctaacatataaagagtgtttttgttgtcccattcttactacaagtttgtatcttttgtcaaagatgaattcaacccggaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35509754 |
gtaaggttgaactcatgtccctaacatataaagagtgtttttgttgtcccattcttactacaagtttgtatcttttgtcaaagatgaattcaacccggaa |
35509853 |
T |
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| Q |
308 |
ttattttctacacattgtgtactaatttggtttt |
341 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35509854 |
ttattttctacacattgtgtactaatttggtttt |
35509887 |
T |
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