View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21482_low_2 (Length: 250)
Name: NF21482_low_2
Description: NF21482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21482_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 7340253 - 7340492
Alignment:
| Q |
10 |
aagaaaatatatccaattcatcacctataaaaagtacatcaattggacacatttaactctaacacactagctagctactatnnnnnnnnnctactacgtg |
109 |
Q |
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| T |
7340253 |
aagaaaatatatccaattcatcacctataaaaagtacatcaattggacacatttaactctaacacactagctagctactat-aaaaaaaactactacgtg |
7340351 |
T |
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| Q |
110 |
tatacatttacctaacctttcttccacttttgaaaaatcttttcttctcttgagnnnnnnnnnnnnnnnnnnnnnnnntaaggatataacataaatatgg |
209 |
Q |
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| T |
7340352 |
tatacatttacctaacctttcttccacttttgaaaaatcttttcttctcttgagaaaaaaggaaaagaaaagccaaaataaggatataccataaatatgg |
7340451 |
T |
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| Q |
210 |
cctatgattaagtcacatgggagcaaaatcttaaaacccca |
250 |
Q |
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| T |
7340452 |
cctatgattaagtcacatgggagcaaaatcttaaaacccca |
7340492 |
T |
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