View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21483_high_1 (Length: 542)
Name: NF21483_high_1
Description: NF21483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21483_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 31066556 - 31066021
Alignment:
| Q |
1 |
gagagaacttggaaaaccttggatctcctttgccatggaatcacataaccaatcaggtatttttctttgcttattttagttgcttgaggagttttcatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31066556 |
gagagaacttggaaaaccttggatctcctttgccatggaatcacataaccaatcaggtatttttctttgcttattttagttgcttgaggagttttcatcc |
31066457 |
T |
|
| Q |
101 |
ctttccccttatattcatggttacttggagaccaagcatcttggtatgggagagggatatatgtttgcattgaacttcttttcatcattttcacatcaaa |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
31066456 |
ctttccccttatatttatggttacttggagaccaagcatcttggtatgggagagggatatatgtttggattgaacttcttttcatcattttcacaacaaa |
31066357 |
T |
|
| Q |
201 |
gtgttnnnnnnnggattgaacttgtgcagattggaatgttctgctacagcgggatgacaccagaacaagttgatcgtttgacaaacgagtttcatattta |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31066356 |
gtgttaaaaaaaggattgaacttgtgcagattggaatgttctgctacagcgggatgacaccagaacaagttgatcgtttgacaaacgagtttcatattta |
31066257 |
T |
|
| Q |
301 |
catgactcgtagtggtcgtataaggttacacacctaatcttaagtctctttctattggaattatctttacattatgacttatgagttccttgaagattga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31066256 |
catgactcgtagtggtcgtataaggttacacacctaatcttaagtctctttctattggaattatctttacattatgacttatgagttccttgaagattga |
31066157 |
T |
|
| Q |
401 |
cacatactgtgtttacttacattacatatatgcgatttttgacagtatggctggtcttaatacaagcaacgttggatatgtggctaacgctatcaacgaa |
500 |
Q |
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| T |
31066156 |
cacatactatgtttacttacattacatatatgtgatttttgacagtatggctggtcttaatacaagcaacgttggatatgtggctaacgctatcaacgaa |
31066057 |
T |
|
| Q |
501 |
gttacaaaatcagcctaaattattcatctctgctac |
536 |
Q |
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||||||||||||||||||||||||||| | |||||| |
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| T |
31066056 |
gttacaaaatcagcctaaattattcatttatgctac |
31066021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 31073384 - 31073273
Alignment:
| Q |
222 |
ttgtgcagattggaatgttctgctacagcgggatgacaccagaacaagttgatcgtttgacaaacgagtttcatatttacatgactcgtagtggtcgtat |
321 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
31073384 |
ttgtgcagattggcatgttctgctacagtgggatgacaccagaacaggttgatcgtttgacaagcgagtttcatatttacatgactcgtaatggtcgtat |
31073285 |
T |
|
| Q |
322 |
aaggttacacac |
333 |
Q |
| |
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||||| |||||| |
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| T |
31073284 |
aaggtgacacac |
31073273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 441 - 527
Target Start/End: Complemental strand, 31073171 - 31073085
Alignment:
| Q |
441 |
gacagtatggctggtcttaatacaagcaacgttggatatgtggctaacgctatcaacgaagttacaaaatcagcctaaattattcat |
527 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
31073171 |
gacagtatggctggtcttaatacgggcaacgttggatatgtggctaatgctatcaacgaggttacaaaatcagcctaaattattcat |
31073085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 31073581 - 31073482
Alignment:
| Q |
61 |
ttttctttgcttattttagttgcttgaggagttttcatccctttc-cccttatattcatggttacttggagaccaagcatcttggtatgggagagggata |
159 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||| |||| ||||||||| |||||||||||| |
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| T |
31073581 |
ttttctttgcttattgtagttgcttgaggagttttcatccccttctctcttatttttatggttacttggagatcaagtatcttggtaggggagagggata |
31073482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31073676 - 31073619
Alignment:
| Q |
1 |
gagagaacttggaaaaccttggatctcctttgccatggaatcacataaccaatcaggt |
58 |
Q |
| |
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||||||| |||||||| || || ||||| ||||||||||||||||||||||||||||| |
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| T |
31073676 |
gagagaatttggaaaatctggggtctccgttgccatggaatcacataaccaatcaggt |
31073619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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