View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21483_high_6 (Length: 328)
Name: NF21483_high_6
Description: NF21483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21483_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 14546854 - 14547127
Alignment:
| Q |
24 |
atcatcacaattgtgaaagagtgggaatcgtcaatgatgtcttatatttcttcttcttctccgatgttctatgtttttatcatttttatgataattctca |
123 |
Q |
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| T |
14546854 |
atcatcacaattgtgaaagagtgggaatcgtcaatgatgtcttatatttcttcttcttctccgatgttctatgtttttatcatttttatgataattctca |
14546953 |
T |
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| Q |
124 |
acgactgtgatttctctgattaaatttgggtaaaaatgtgggcataaatgatgagatgattatgtcttggtccaaaaggtaataatcctgaaatttttat |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14546954 |
acgactgtgatttctctgattaaatttgggtaaaaatgtgggcataaatgatgagataattatgtcttggtccaaaaggtaataatcctgaaatttttat |
14547053 |
T |
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| Q |
224 |
attttaactgtggtatttactactatagtcgattttgaattgattgcttttattttgatcaataatgtgtattt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14547054 |
attttaactgtggtatttactactatagtcgattttgaattgattgcttttattttgatcaataatgtgtattt |
14547127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 49 - 295
Target Start/End: Original strand, 30436104 - 30436348
Alignment:
| Q |
49 |
aatcgtcaatgatgtcttatatttcttcttcttctccgatgttctatgtttttatcattttt-atgataattctcaacgactgtgatttctctgattaaa |
147 |
Q |
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||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||| ||||||| |
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| T |
30436104 |
aatcgacaatgatgtcttatatttctacttcttctgtgatgtgctatgcttttatcattttttatgataattct-aacgagtgtgatttctttgattaa- |
30436201 |
T |
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| Q |
148 |
tttgggtaaaaatgtgggcataaatgatgagatgattatgtcttggtccaaaaggtaataatcctgaaatttttatattttaactgtggtatttactact |
247 |
Q |
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| T |
30436202 |
tatgggtaaaa-tgtggacataaatgatgagacgattttgccttgttccaaaaggtaataatcatgaactttttatattttaaccttcatgtttaccact |
30436300 |
T |
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| Q |
248 |
atagtcgattttgaattgattgcttttattttgatcaataatgtgtat |
295 |
Q |
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||||| || | ||||||||||| ||||||| |||| | || ||||||| |
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| T |
30436301 |
atagttgaatctgaattgattgattttattctgataagtagtgtgtat |
30436348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 11883534 - 11883375
Alignment:
| Q |
24 |
atcatcacaattgtgaaagagtgggaatcgtcaatgatgtcttatatttcttcttcttctccgatgttctatgtttttatcatttttatgataattctca |
123 |
Q |
| |
|
|||||||||||||||| || | |||| |||| || ||||||||||||| |||||| | | ||| ||||||||| || ||||||| |||||| ||| |
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| T |
11883534 |
atcatcacaattgtgattgaacgaaaatcatcaacgaagtcttatatttctacttcttatttgttgtgctatgtttt-atattttttataataattttca |
11883436 |
T |
|
| Q |
124 |
acgactgtgatttctctgattaaatttgggtaaaaatgtgggcataaatgatgagatgatt |
184 |
Q |
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|| |||||||||||| ||||||||| || ||||||||||| |||||||||||| |||||| |
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| T |
11883435 |
acaactgtgatttctttgattaaatatgagtaaaaatgtgcacataaatgatgacatgatt |
11883375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 12095212 - 12095273
Alignment:
| Q |
49 |
aatcgtcaatgatgtcttatatttcttcttcttctccgatgttctatgtttttatcattttt |
110 |
Q |
| |
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||||||||| ||||| ||||||||| |||||| || | ||| ||||||||||||||||||| |
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| T |
12095212 |
aatcgtcaacgatgtgctatatttctacttcttatctgttgtgctatgtttttatcattttt |
12095273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 25352751 - 25352793
Alignment:
| Q |
239 |
tttactactatagtcgattttgaattgattgcttttattttga |
281 |
Q |
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|||||||||||||| || |||||||||||| |||||||||||| |
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| T |
25352751 |
tttactactatagttgaatttgaattgattacttttattttga |
25352793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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