View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21484_low_2 (Length: 330)

Name: NF21484_low_2
Description: NF21484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21484_low_2
NF21484_low_2
[»] chr3 (3 HSPs)
chr3 (1-312)||(34760906-34761217)
chr3 (1-52)||(25447298-25447349)
chr3 (101-165)||(44014714-44014778)
[»] chr1 (4 HSPs)
chr1 (1-72)||(9572142-9572213)
chr1 (4-48)||(3495693-3495737)
chr1 (1-52)||(48830130-48830181)
chr1 (1-49)||(15565889-15565937)
[»] chr7 (3 HSPs)
chr7 (33-116)||(25422347-25422431)
chr7 (1-52)||(20526411-20526462)
chr7 (1-52)||(22283798-22283849)
[»] chr6 (2 HSPs)
chr6 (1-73)||(1402961-1403033)
chr6 (1-52)||(2735034-2735085)
[»] chr5 (1 HSPs)
chr5 (2-52)||(26516366-26516416)
[»] chr4 (2 HSPs)
chr4 (1-55)||(28300350-28300404)
chr4 (66-149)||(7367986-7368070)
[»] chr8 (3 HSPs)
chr8 (211-244)||(29356723-29356756)
chr8 (101-165)||(16162850-16162914)
chr8 (29-85)||(29592194-29592250)
[»] chr2 (1 HSPs)
chr2 (4-48)||(44439418-44439462)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 34760906 - 34761217
Alignment:
Q  1 aagataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacc 100  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760906 aagataaaataaagttaaactatgtttatataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacc 34761005  T
Q  101 ttctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaagaggcaaaatatcagtaacactgccactggttatagagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761006 ttctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaagaggcaaaatatcagtaacactgccactggttatagagaa 34761105  T
Q  201 aagaaaaatgcatgcctgaattgtcttcacagcaggcttattgattttcatgaggtgagttctgattcttcttaacttaagcaactctgaacctgcttta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761106 aagaaaaatgcatgcctgaattgtcttcacagcaggcttattgattttcatgaggtgagttctgattcttcttaacttaagcaactctgaacctgcttta 34761205  T
Q  301 taagtctggtta 312  Q
    ||||||||||||    
T  34761206 taagtctggtta 34761217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25447349 - 25447298
Alignment:
Q  1 aagataaaataaagttaaactacgtttgtataagctataaactgttttcata 52  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||    
T  25447349 aagataaaataaacttaaattgtttttgtataagctataaactgttttcata 25447298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 44014778 - 44014714
Alignment:
Q  101 ttctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaagaggc 165  Q
    ||||||||||||||||| | |||||| |  |||| |||||||||||||| | |||||||| ||||    
T  44014778 ttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacaggc 44014714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 9572213 - 9572142
Alignment:
Q  1 aagataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttat 72  Q
    ||||||||||||||||||| | | |||||||||||||||| | ||||||||| || |||| ||||| |||||    
T  9572213 aagataaaataaagttaaattgcttttgtataagctataagccgttttcatatgccatcattgagaacttat 9572142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 3495737 - 3495693
Alignment:
Q  4 ataaaataaagttaaactacgtttgtataagctataaactgtttt 48  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||    
T  3495737 ataaaataaagttaaattacgtttgtataacctataaattgtttt 3495693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 48830181 - 48830130
Alignment:
Q  1 aagataaaataaagttaaactacgtttgtataagctataaactgttttcata 52  Q
    ||||||||||||||| ||||||  ||  ||||||||||||||||||||||||    
T  48830181 aagataaaataaagtcaaactattttcatataagctataaactgttttcata 48830130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15565937 - 15565889
Alignment:
Q  1 aagataaaataaagttaaactacgtttgtataagctataaactgttttc 49  Q
    ||||||||||||||| ||||||  ||||||||| |||||| ||||||||    
T  15565937 aagataaaataaagtcaaactatttttgtataaactataagctgttttc 15565889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 25422347 - 25422431
Alignment:
Q  33 agctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacct-tctcaaacagtctca 116  Q
    ||||||||| |||||||| |||| ||||  ||||| |||||||||||||||||  ||||||||| | || || ||||||||||||    
T  25422347 agctataaattgttttcacaggctatcatggagagtttataaacatgtcataaggtgtttccataagctctcccaaacagtctca 25422431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20526411 - 20526462
Alignment:
Q  1 aagataaaataaagttaaactacgtttgtataagctataaactgttttcata 52  Q
    ||||||||||||||||||| || ||||||| | ||||||| |||||||||||    
T  20526411 aagataaaataaagttaaattatgtttgtacatgctataagctgttttcata 20526462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22283849 - 22283798
Alignment:
Q  1 aagataaaataaagttaaactacgtttgtataagctataaactgttttcata 52  Q
    ||||||||||||||||||| |   ||||||| ||||||||||||||||||||    
T  22283849 aagataaaataaagttaaattgtttttgtatcagctataaactgttttcata 22283798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1402961 - 1403033
Alignment:
Q  1 aagataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttata 73  Q
    ||||||||||||||||||||||  ||  ||||||||||||| |||||||||| || ||||  |||| ||||||    
T  1402961 aagataaaataaagttaaactattttcatataagctataaattgttttcataagctatcatggagatcttata 1403033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2735034 - 2735085
Alignment:
Q  1 aagataaaataaagttaaactacgtttgtataagctataaactgttttcata 52  Q
    ||||||||||||||||||| ||  ||||||||| |||||| |||||||||||    
T  2735034 aagataaaataaagttaaattatttttgtataatctataagctgttttcata 2735085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 26516366 - 26516416
Alignment:
Q  2 agataaaataaagttaaactacgtttgtataagctataaactgttttcata 52  Q
    |||||||||||||| ||||||| ||  |||||| |||||||||||||||||    
T  26516366 agataaaataaagtcaaactactttcatataagttataaactgttttcata 26516416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28300404 - 28300350
Alignment:
Q  1 aagataaaataaagttaaactacgtttgtataagctataaactgttttcataggc 55  Q
    |||| |||||||||||||| |   ||||||||||||||||||| |||||||||||    
T  28300404 aagaaaaaataaagttaaattgtttttgtataagctataaactattttcataggc 28300350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 7368070 - 7367986
Alignment:
Q  66 agcttataaacatgtcataaattgtttccatgacct-tctcaaacagtctcacgaatgtttacgacagtatataaactcaaataa 149  Q
    ||||||||||||||||||||  ||||| ||||| || || ||||||||||||| |  ||||| | | ||| ||||||||||||||    
T  7368070 agcttataaacatgtcataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataa 7367986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 29356756 - 29356723
Alignment:
Q  211 catgcctgaattgtcttcacagcaggcttattga 244  Q
    ||||||||||||||||| ||||||||||||||||    
T  29356756 catgcctgaattgtcttaacagcaggcttattga 29356723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 16162850 - 16162914
Alignment:
Q  101 ttctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaagaggc 165  Q
    ||||||||||||||||| | |||||| |  |||| |||||||||||||| | |||||||| ||||    
T  16162850 ttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacaggc 16162914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 29592250 - 29592194
Alignment:
Q  29 tataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataa 85  Q
    |||||||||||| ||||||||||| || ||| | ||||||||||  |||||||||||    
T  29592250 tataagctataatctgttttcataagctatcccagagagcttatggacatgtcataa 29592194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 44439462 - 44439418
Alignment:
Q  4 ataaaataaagttaaactacgtttgtataagctataaactgtttt 48  Q
    ||||||||||||||||||   ||||||||||||||||| ||||||    
T  44439462 ataaaataaagttaaactgtttttgtataagctataaattgtttt 44439418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University