View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21484_low_4 (Length: 224)
Name: NF21484_low_4
Description: NF21484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21484_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 33050299 - 33050488
Alignment:
| Q |
12 |
ggcgatgaatcacaggttgctcataatgaaggttatgattcagatgaagtcctcttgatggccacaatcaaaattggtgaggaacaaaatgatgaagatg |
111 |
Q |
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| T |
33050299 |
ggcgatgaatcacaggttgctcataatgagggttatgattcagatgaagtcctcttgatggctacaatcaaaattggtgaggaacaaaatgatgaagatg |
33050398 |
T |
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| Q |
112 |
gtatatggatacatgatgctcaaattacataacaggttaaaagtcttggtactctaaattagattattcaattaatagaaagataagatt |
201 |
Q |
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| T |
33050399 |
gtatctggatacatgatgctcaaattacataacatgttaaaagtcttggtactctaaattagattattcaattaatagaaagataagatt |
33050488 |
T |
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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 5313459 - 5313646
Alignment:
| Q |
15 |
gatgaatcacaggttgctcataatgaaggttatgattcagatgaagtcctcttgatggccacaatcaaaattggtgaggaacaaaatgatgaagatggta |
114 |
Q |
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| T |
5313459 |
gatgaagcacaatttgatcataatgattgttatgactcaaatgaagtcttcttgttggctacaatcaaaactgatgatgaacataatggtgaa--tggta |
5313556 |
T |
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| Q |
115 |
tatggatacatgatgctcaaattacataacaggt-taaaagtcttggtactctaaattagattattcaattaatagaaagataagatttg |
203 |
Q |
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| T |
5313557 |
tatggatacacgatgctcaaatcatatgacaggtaaaaaagtcttggttctctgagttagatggttcaattagtaaaaagacaagatttg |
5313646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 45495828 - 45495780
Alignment:
| Q |
157 |
ttggtactctaaattagattattcaattaatagaaagataagatttgta |
205 |
Q |
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| T |
45495828 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgta |
45495780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 45503570 - 45503522
Alignment:
| Q |
157 |
ttggtactctaaattagattattcaattaatagaaagataagatttgta |
205 |
Q |
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| T |
45503570 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgta |
45503522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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