View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21485_high_1 (Length: 690)

Name: NF21485_high_1
Description: NF21485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21485_high_1
NF21485_high_1
[»] chr4 (3 HSPs)
chr4 (40-340)||(26830631-26830927)
chr4 (339-479)||(13893991-13894131)
chr4 (496-615)||(13893814-13893933)
[»] chr2 (3 HSPs)
chr2 (496-666)||(6049783-6049953)
chr2 (337-479)||(6049583-6049725)
chr2 (378-463)||(26661223-26661308)
[»] chr1 (4 HSPs)
chr1 (496-666)||(44306000-44306170)
chr1 (339-479)||(44305802-44305942)
chr1 (383-463)||(29845336-29845416)
chr1 (625-668)||(22893802-22893845)
[»] chr7 (3 HSPs)
chr7 (339-463)||(13331864-13331988)
chr7 (341-463)||(13342779-13342901)
chr7 (613-667)||(33430313-33430367)
[»] chr5 (1 HSPs)
chr5 (339-463)||(5672335-5672459)
[»] chr6 (3 HSPs)
chr6 (378-463)||(21481141-21481226)
chr6 (378-464)||(19700890-19700976)
chr6 (627-668)||(19701161-19701202)
[»] scaffold0586 (1 HSPs)
scaffold0586 (378-464)||(9321-9407)
[»] chr3 (2 HSPs)
chr3 (378-463)||(15762307-15762392)
chr3 (339-373)||(41416257-41416291)
[»] chr8 (4 HSPs)
chr8 (378-464)||(10637351-10637437)
chr8 (378-464)||(32718157-32718243)
chr8 (625-668)||(10637647-10637690)
chr8 (625-668)||(32717904-32717947)
[»] scaffold0500 (1 HSPs)
scaffold0500 (378-420)||(358-400)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 40 - 340
Target Start/End: Original strand, 26830631 - 26830927
Alignment:
Q  40 tatttagcaaaaccacctaaccactctccatatatcactgcctctaataactccaccacatcttattctctcattttctttacgcaaacgattcatgtac 139  Q
    |||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  26830631 tatttagcaaaaccacctaaccactctccat----cactgcttctaataactccaccacatcttattatctctttttctttacgcaaacgattcatgtac 26830726  T
Q  140 gcattaacccaatccgttagaggaggtttacaccaataagcatctcacgattcccgcctttatatctattgccttaatggcctttaggtttctaatttta 239  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26830727 gcattaacccaacccgttggaggaggtttacaccaataagcatctcacggttcccgcctttatatctattgccttaatggcctttaggtttctaatttta 26830826  T
Q  240 tgtgcttggggtctagccctttcatggctcatttaaaaggcatattgtgatatgcatgatctaaagctcaaaccacggattatccatttattcatattaa 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26830827 tgtgcttggggtctagccctttcatggctcatttaaaaggcatattgtgatatgcacgatctaaagctcaaaccacggattatccatttattcatattaa 26830926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 339 - 479
Target Start/End: Complemental strand, 13894131 - 13893991
Alignment:
Q  339 agggtgtgtttgtttcatggaatgaaaatgtattcttaagaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcc 438  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13894131 agggtgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcc 13894032  T
Q  439 caggaatacatttttcccaggaaagcagctcccccacgttc 479  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  13894031 taggaatacatttttcccaggaaagcagctcccccacgttc 13893991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 496 - 615
Target Start/End: Complemental strand, 13893933 - 13893814
Alignment:
Q  496 cttttattcccaggaaatgtaaacccatgatctatttaaaaagccatttatgcccctgcaattcccgcttttctttctatgtgaactcctattcccgcta 595  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  13893933 cttttattcccagaaaatgtaaacccatgatctatttaaaaagccatttatgcccctgcaattctcgcttttctttctctgtgaactcctcttcccgcta 13893834  T
Q  596 aacattccaccttccctgat 615  Q
    ||||||||||||||| ||||    
T  13893833 aacattccaccttccttgat 13893814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 496 - 666
Target Start/End: Original strand, 6049783 - 6049953
Alignment:
Q  496 cttttattcccaggaaatgtaaacccatgatctatttaaaaagccatttatgcccctgcaattcccgcttttctttctatgtgaactcctattcccgcta 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6049783 cttttattcccaggaaatgtaaacccatgatctatttaaaaagccatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccgcta 6049882  T
Q  596 aacattccaccttccctgatcttctatgaaaacccatcatctttgtggtgttcatcaactgcttgctattt 666  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6049883 aacattccaccttccctgatcttctataaaaacccatcatctttgtggtgttcatcaactgcttgctattt 6049953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 337 - 479
Target Start/End: Original strand, 6049583 - 6049725
Alignment:
Q  337 taagggtgtgtttgtttcatggaatgaaaatgtattcttaagaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatg 436  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6049583 taagggtgtgtttgtttcatggaataaaaatgtattcctaggaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaatatg 6049682  T
Q  437 cccaggaatacatttttcccaggaaagcagctcccccacgttc 479  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  6049683 cctaggaatacatttttcccaggaaagcagctcccccacgttc 6049725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 378 - 463
Target Start/End: Original strand, 26661223 - 26661308
Alignment:
Q  378 gaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcccaggaatacatttttcccaggaaag 463  Q
    |||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  26661223 gaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaag 26661308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 496 - 666
Target Start/End: Original strand, 44306000 - 44306170
Alignment:
Q  496 cttttattcccaggaaatgtaaacccatgatctatttaaaaagccatttatgcccctgcaattcccgcttttctttctatgtgaactcctattcccgcta 595  Q
    |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44306000 cttttagtcctaggaaatataaacccatgatctatttaaaaagccatttatgcccctgcaattcccgcttttctttctctgtgaactcctattcccgcta 44306099  T
Q  596 aacattccaccttccctgatcttctatgaaaacccatcatctttgtggtgttcatcaactgcttgctattt 666  Q
    ||||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44306100 aacattccaccttcttttatcttctataaaaacccatcatctttgtggtgttcatcaactgcttgctattt 44306170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 339 - 479
Target Start/End: Original strand, 44305802 - 44305942
Alignment:
Q  339 agggtgtgtttgtttcatggaatgaaaatgtattcttaagaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcc 438  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44305802 agggtgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcc 44305901  T
Q  439 caggaatacatttttcccaggaaagcagctcccccacgttc 479  Q
     | ||||||||||||||||||||||||||||||||||||||    
T  44305902 taagaatacatttttcccaggaaagcagctcccccacgttc 44305942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 463
Target Start/End: Original strand, 29845336 - 29845416
Alignment:
Q  383 taaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcccaggaatacatttttcccaggaaag 463  Q
    ||||| || ||||||| ||| ||||||||||||||| |||| ||| |||||||||  ||||||| ||||| | ||||||||    
T  29845336 taaggttgaaattaaatattcctttgtttggtagattggaacaaccaaaatatgcttaggaataaattttactcaggaaag 29845416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 668
Target Start/End: Original strand, 22893802 - 22893845
Alignment:
Q  625 aaacccatcatctttgtggtgttcatcaactgcttgctatttga 668  Q
    |||||||| |||||||| |||||||||||||||||||| |||||    
T  22893802 aaacccatgatctttgtagtgttcatcaactgcttgctgtttga 22893845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 339 - 463
Target Start/End: Complemental strand, 13331988 - 13331864
Alignment:
Q  339 agggtgtgtttgtttcatggaatgaaaatgtattcttaagaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcc 438  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || ||| |||| |||||||||||||||  ||| ||| |||||    
T  13331988 agggtgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcc 13331889  T
Q  439 caggaatacatttttcccaggaaag 463  Q
    |||||||||||||||  ||||||||    
T  13331888 caggaatacatttttttcaggaaag 13331864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 341 - 463
Target Start/End: Complemental strand, 13342901 - 13342779
Alignment:
Q  341 ggtgtgtttgtttcatggaatgaaaatgtattcttaagaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgccca 440  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||| || ||| |||| |||||||||||||||  ||| ||| |||| ||    
T  13342901 ggtgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctca 13342802  T
Q  441 ggaatacatttttcccaggaaag 463  Q
    |||||||||||||  ||||||||    
T  13342801 ggaatacatttttttcaggaaag 13342779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 613 - 667
Target Start/End: Complemental strand, 33430367 - 33430313
Alignment:
Q  613 gatcttctatgaaaacccatcatctttgtggtgttcatcaactgcttgctatttg 667  Q
    |||||||||| ||||||||  ||||||| |||||||||||| || ||||||||||    
T  33430367 gatcttctattaaaacccacgatctttgaggtgttcatcaagtgtttgctatttg 33430313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 339 - 463
Target Start/End: Complemental strand, 5672459 - 5672335
Alignment:
Q  339 agggtgtgtttgtttcatggaatgaaaatgtattcttaagaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcc 438  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || ||| |||| |||||||||||||||  ||| ||| ||||     
T  5672459 agggtgtgtttgtttcatggaatgaaaatgtattcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgct 5672360  T
Q  439 caggaatacatttttcccaggaaag 463  Q
    ||||||||||||||| |||||||||    
T  5672359 caggaatacattttttccaggaaag 5672335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 378 - 463
Target Start/End: Original strand, 21481141 - 21481226
Alignment:
Q  378 gaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcccaggaatacatttttcccaggaaag 463  Q
    |||| ||||||||||||| || |||||||||||||||||||||||| |||| |||||| || ||||||||||||||| ||||||||    
T  21481141 gaatttaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaatacatttttctcaggaaag 21481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 378 - 464
Target Start/End: Original strand, 19700890 - 19700976
Alignment:
Q  378 gaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcccaggaatacatttttcccaggaaagc 464  Q
    ||||||||||||||||||||| ||| ||||||||||||  ||||||  ||| ||||||| ||||||||||| |||||||||||||||    
T  19700890 gaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatacaattttcccaggaaagc 19700976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 668
Target Start/End: Original strand, 19701161 - 19701202
Alignment:
Q  627 acccatcatctttgtggtgttcatcaactgcttgctatttga 668  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  19701161 acccatgatctttgtagtgttcatcaactgcttgctatttga 19701202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 464
Target Start/End: Original strand, 9321 - 9407
Alignment:
Q  378 gaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcccaggaatacatttttcccaggaaagc 464  Q
    |||||||||| |||||||||| ||| ||||||||||||| ||||||  ||| ||||||| |||||||| || |||||||||||||||    
T  9321 gaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaagc 9407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 378 - 463
Target Start/End: Complemental strand, 15762392 - 15762307
Alignment:
Q  378 gaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcccaggaatacatttttcccaggaaag 463  Q
    |||||||||||||||||  || ||| ||||||||||||| |||| |  ||| ||||||||| ||||||||||||||||||||||||    
T  15762392 gaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttcccaggaaag 15762307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 373
Target Start/End: Complemental strand, 41416291 - 41416257
Alignment:
Q  339 agggtgtgtttgtttcatggaatgaaaatgtattc 373  Q
    |||||||||||||| ||||||||||||||||||||    
T  41416291 agggtgtgtttgttacatggaatgaaaatgtattc 41416257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 464
Target Start/End: Original strand, 10637351 - 10637437
Alignment:
Q  378 gaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcccaggaatacatttttcccaggaaagc 464  Q
    |||||||||| |||||||||| ||| ||||||||||||  ||||||  ||| ||||||| |||||||| || |||||||||||||||    
T  10637351 gaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaagc 10637437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 464
Target Start/End: Complemental strand, 32718243 - 32718157
Alignment:
Q  378 gaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcccaggaatacatttttcccaggaaagc 464  Q
    |||||||||| |||||||||| ||| ||||||||||||  ||||||  ||| ||||||| | |||||| || |||||||||||||||    
T  32718243 gaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtctaggaatgcaattttcccaggaaagc 32718157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 668
Target Start/End: Original strand, 10637647 - 10637690
Alignment:
Q  625 aaacccatcatctttgtggtgttcatcaactgcttgctatttga 668  Q
    |||||||| |||||||| |||||||||||||||||||| |||||    
T  10637647 aaacccattatctttgtagtgttcatcaactgcttgctgtttga 10637690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 668
Target Start/End: Complemental strand, 32717947 - 32717904
Alignment:
Q  625 aaacccatcatctttgtggtgttcatcaactgcttgctatttga 668  Q
    |||||||| |||||||| |||||||||||||||||||| |||||    
T  32717947 aaacccattatctttgtagtgttcatcaactgcttgctgtttga 32717904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 400 - 358
Alignment:
Q  378 gaatctaaggctggaattaaagattgctttgtttggtagatgg 420  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  400 gaatctaaggctggaattgaatattgctttgtttggtagatgg 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University