View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21485_high_2 (Length: 602)
Name: NF21485_high_2
Description: NF21485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21485_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 4e-89; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 34484523 - 34484341
Alignment:
| Q |
28 |
caccagtaggggtaaggcaacaaattaagataagatggtggtgtgcaagtaaacaaggctgtgtaatgcatgtccacaataaaactttaaagcaatatat |
127 |
Q |
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| T |
34484523 |
caccagtaggggtaaggcaacaaattaagataagatggtggtgtgcaagtaaacaaggctgtgtaatgcatgtccacaataaaactttaaagcaatatat |
34484424 |
T |
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| Q |
128 |
cttaataatttgattactagtaaagaattaaatgactcaaatttaaattaaagtcactgttaagcttatatttaagtgcaatg |
210 |
Q |
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| T |
34484423 |
cttaataatttgattactagtgaagaattaaatgactcaaatttaaattaaagtcacagttaagtttatattgaagtgcaatg |
34484341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 345 - 502
Target Start/End: Original strand, 26982154 - 26982309
Alignment:
| Q |
345 |
ataccaacacaggcaccaccccaagttcagtcatcaactttggtgtgaccttgacaacttgtttagccaacatttcaatatcctttgctgcttcctcttt |
444 |
Q |
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| T |
26982154 |
ataccaatacaggcaccacccgaagttcagtcatcaactttc---tgaccttaacatcttgtttagccagcatctcaatatcttttgctgcttcctcttt |
26982250 |
T |
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| Q |
445 |
ctcttcccagctctcaaagtgaagattcttcacac-atctttataatagaatcattggc |
502 |
Q |
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| T |
26982251 |
ctcttcccagctcccaaagtgaagcttcttcacacaatctttgcaatacaatcattggc |
26982309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 392 - 533
Target Start/End: Original strand, 48205432 - 48205574
Alignment:
| Q |
392 |
accttgacaacttgtttagccaacatttcaatatcctttgct----gcttcctctttctcttcccagctctcaaagtgaagattcttcacacatctttat |
487 |
Q |
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| T |
48205432 |
accttgacatcttctttagccaacatttcagtatcctttgctcgctgctgcttgtttctcttcccagctcccaaagtgaagcttcttcacacttctttgc |
48205531 |
T |
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| Q |
488 |
aatagaatcattggcttctcctccttatcactaatatgcttctcca |
533 |
Q |
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| T |
48205532 |
aatagaatcattggctt---ctccttatcactaacatgcttctcca |
48205574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 34489877 - 34489814
Alignment:
| Q |
70 |
gtgcaagtaaacaaggctgtgtaatgcatgtccacaataaaactttaaagcaatatatcttaat |
133 |
Q |
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| T |
34489877 |
gtgcaagtacacacggctgtgtaatgcatgtccacaacaaaactttaaagcaatatatcttaat |
34489814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 34493105 - 34493035
Alignment:
| Q |
192 |
cttatatttaagtgcaatggtgtacaaagagatgcatatatatagcaaaatgaacaaagagtataagaaat |
262 |
Q |
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| T |
34493105 |
cttatattgaagtgcaatggtgtacaaagagatgcatatataaggcaaaatgaacaaaaagcatatgaaat |
34493035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 26999184 - 26999132
Alignment:
| Q |
428 |
tttgctgcttcctctttctcttcccagctctcaaagtgaagattcttcacaca |
480 |
Q |
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| T |
26999184 |
tttgctgcttcctctttctcttcccagctcccaaagtgaagcttcttcacaca |
26999132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 517
Target Start/End: Complemental strand, 34492668 - 34492627
Alignment:
| Q |
476 |
acacatctttataatagaatcattggcttctcctccttatca |
517 |
Q |
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| T |
34492668 |
acacatctttataatagaatcattggcttctcctccttatca |
34492627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 48205299 - 48205377
Alignment:
| Q |
233 |
atagcaaaatgaacaaagagtataagaaatctgaaac----ttacatgtaacttccatgagctaactggatcaaagctt |
307 |
Q |
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| T |
48205299 |
atagccaaatgaacaaaaaacataagaaatctgaaacataattacatgtaacttccattagctagctggatcaaagctt |
48205377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 26985105 - 26985057
Alignment:
| Q |
432 |
ctgcttcctctttctcttcccagctctcaaagtgaagattcttcacaca |
480 |
Q |
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| T |
26985105 |
ctgcttcctctttcacttcccagctcccaaagtgaagcttcttcacaca |
26985057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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