View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21485_high_3 (Length: 488)
Name: NF21485_high_3
Description: NF21485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21485_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Original strand, 37660909 - 37661363
Alignment:
| Q |
12 |
aatactaatatagacgcaagagaggtagggtgagtgtccttgtcttttgcctgaactttttactcctccaattaatggtaaataattgtattgaccctcc |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37660909 |
aataataatatagacgcaagagaggtagggtgagtgtccttgtcttttgcctgaactttttactcctccaattaatggtaaataattgtattgaccctcc |
37661008 |
T |
|
| Q |
112 |
attggaaaa--cttgggagaaaatgaagtatcatcagcactcaatttgtgacaacacaaaaatgaaagcttagataaatgggcaaaagtgttcaaattgg |
209 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37661009 |
attggaaaaaacttgggagaaaatgaagtatcatcagcactcaatttgtgacaacacaaaaatgaaagcttagataaatgggcaaaagtgtacaaattgg |
37661108 |
T |
|
| Q |
210 |
aaaatatt---aatatttggaattggagacacatctttttcatgctcttctcagtagtaaaaaagatgtgtactatggtcactcacagagtcactatccc |
306 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37661109 |
aaaatattattaatatttggaattggagacacatctttttcatgctcttctcagtagtaaaaaagatgtgtactatggtcactcacacagtcactatccc |
37661208 |
T |
|
| Q |
307 |
tctcaccctctcagtgcaacgtcgatagtctaattgcagctttgactagttgaaagctgcggaatttaacacagcaatgaatcaagtaaccttgaaaagg |
406 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37661209 |
tctcaccctctcagtgcaatgtcgatagtctaattgcagctttgactagttgaaagctgcggaatttaacacagcaatgaatcaagtaaccttgaaaagg |
37661308 |
T |
|
| Q |
407 |
aaactgaaacaataaaagttccacatgctttttaagtctatttgctgcaaaatgc |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
37661309 |
aaactgaaacaataaaagttccacatgctttttaagtctatttggtgtaaaatgc |
37661363 |
T |
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