View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21485_high_4 (Length: 447)
Name: NF21485_high_4
Description: NF21485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21485_high_4 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 218 - 447
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
| Q |
218 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
317 |
Q |
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| T |
34899746 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
34899845 |
T |
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| Q |
318 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
417 |
Q |
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| T |
34899846 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
34899945 |
T |
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| Q |
418 |
gtttggtagtttcaactttcaagttgagat |
447 |
Q |
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| T |
34899946 |
gtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 33706505 - 33706670
Alignment:
| Q |
1 |
tgcaccattcatcctttttcaattgtgagatgttatatagttacagtgacatgttcttcattataactatgacatgcaagtgaatgataagaacaaattc |
100 |
Q |
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| T |
33706505 |
tgcaccattcatcctttttcagttgtgagatgttatatagttacagtgacatgttcttcattataactatgacatgcaagtgaatgataagaacaaattc |
33706604 |
T |
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| Q |
101 |
atccacttgatgacatcaattccagagtgctctctctaataacttagcttagattgaacactgact |
166 |
Q |
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| T |
33706605 |
atccacttgatgacatcaattccagagtgctctctctaataacttagcttagattgaacaatgact |
33706670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 21270089 - 21270218
Alignment:
| Q |
30 |
atgttatatagttacagtgacatgttcttcattataactatgacatgcaagtgaatgataagaacaaattcatccacttgatgacatcaattccagagtg |
129 |
Q |
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|||||||| || |||||||||||||||||||||||||| || ||||||||||| ||| |||||||||||| ||||||||| | |||||||||||||||| |
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| T |
21270089 |
atgttatacagctacagtgacatgttcttcattataacaataacatgcaagtggatgttaagaacaaatttatccacttgtttacatcaattccagagta |
21270188 |
T |
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| Q |
130 |
ctctctctaataacttagcttagattgaac |
159 |
Q |
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| T |
21270189 |
ctctctctaatagcttagcctagattgaac |
21270218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21173975 - 21174038
Alignment:
| Q |
1 |
tgcaccattcatcctttttcaattgtgagatgttatatagttacagtgacatgttcttcattat |
64 |
Q |
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| T |
21173975 |
tgcaccattcaacctttttcagttgtgagatgttatatagttacggtgacatgttcttcattat |
21174038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 21212606 - 21212661
Alignment:
| Q |
43 |
acagtgacatgttcttcattataactatgacatgcaagtgaatgataagaacaaatt |
99 |
Q |
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| T |
21212606 |
acagtgacatgttct-cattataactataatatgcaagtggatggtaagaacaaatt |
21212661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 21349726 - 21349812
Alignment:
| Q |
44 |
cagtgacatgttcttcattataactatgacatgcaagtgaatgataagaacaaattcatccacttgatgacatcaattccagagtgct |
131 |
Q |
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| T |
21349726 |
cagtgacatatt-ttcattagaactatgacatgcaattggatgagaagaagaaactcatctattagttgacatcaatttcagagtgct |
21349812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 21654140 - 21653995
Alignment:
| Q |
12 |
tcctttttcaattgtgagatgttatatagttacagtgacatgttcttcattataactatgacatgcaagtgaatgataagaacaaattcatccacttgat |
111 |
Q |
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| T |
21654140 |
tccttcttcagttgggaaatgttatatagttacagtgacatgttcttcattataacgataacatgcaagtggatgttaagaacaaatttatccacttgtt |
21654041 |
T |
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| Q |
112 |
gacatcaattccagagtgctctctctaataacttagcttagattgaac |
159 |
Q |
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| T |
21654040 |
tacatcaattccagagt--actctctaatagcttagcttagattgaac |
21653995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 14532 - 14462
Alignment:
| Q |
61 |
ttataactatgacatgcaagtgaatgataagaacaaattcatccacttgatgacatcaattccagagtgct |
131 |
Q |
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| T |
14532 |
ttataactataacatgcaattggcatataagaacaaattcatccattagttgacatcgattccagagtgct |
14462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 8506 - 8470
Alignment:
| Q |
59 |
cattataactatgacatgcaagtgaatgataagaaca |
95 |
Q |
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| T |
8506 |
cattataactatgacatgcaattggatgataagaaca |
8470 |
T |
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