View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21486_high_2 (Length: 571)

Name: NF21486_high_2
Description: NF21486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21486_high_2
NF21486_high_2
[»] chr5 (2 HSPs)
chr5 (214-553)||(34713942-34714284)
chr5 (15-158)||(34714346-34714489)
[»] chr2 (1 HSPs)
chr2 (52-127)||(11615730-11615805)
[»] chr8 (1 HSPs)
chr8 (56-116)||(11806433-11806493)
[»] chr3 (2 HSPs)
chr3 (60-119)||(23270866-23270925)
chr3 (52-127)||(28978994-28979069)
[»] chr7 (1 HSPs)
chr7 (49-113)||(33730138-33730202)
[»] chr1 (1 HSPs)
chr1 (52-116)||(11199928-11199992)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 214 - 553
Target Start/End: Complemental strand, 34714284 - 34713942
Alignment:
Q  214 gagtggggtcctataaccgggcctgagtgcaaccttagggagttcgaggttcggtgataa-ccatttcggatgtacttcctatttggttatggctagaat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| ||||||||    
T  34714284 gagtggggtcctataaccgggcctgagtgcaaccttagggagttagaggttcggtgataaaccttttcggatgtacttcctatttggttattgctagaat 34714185  T
Q  313 ctcatctagagtgcgactttttcgtgaatgcccatatttcggtgtgtggttcattccgaacaagtacctctagagaccgaattcaagcgagattttagag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  34714184 ctcatctagagtgcgactttttcgtgaatgcccatatttcggaatgtggttcattccgaacgagtacctctagagaccaaattcaagcgagattttagag 34714085  T
Q  413 accatccatgcgagttcacaatagatccatattttagaatttctctgatcata--ggaagnnnnnnnnnntctaggacacaaggagcataacttatctat 510  Q
    |||  ||| |||||||||||||| ||||||||||||||||||||  |||||||  ||||           |||||| ||||||||||||||||||||| |    
T  34714084 accgcccaagcgagttcacaataaatccatattttagaatttcttcgatcataggggaaaataaaaacattctaggccacaaggagcataacttatctct 34713985  T
Q  511 taatttctctatcctcataatttctaattctactatgacaatg 553  Q
    |||||| | || |||||||||||||||||| ||| ||||||||    
T  34713984 taatttatttaccctcataatttctaattccactgtgacaatg 34713942  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 34714489 - 34714346
Alignment:
Q  15 catcataaccaaaatattaaagaattgggtaatgtgggtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||    
T  34714489 catcataaccaaaatattaaagaattgggtaatgtgggtcatctctcttctatatccaatattttacccattcatatgtgatgtgggacttaaccactca 34714390  T
Q  115 catttgatacccagcaatacatgtgtagttgttttacacattgg 158  Q
    ||||| | ||||| | ||||||||||||||||||||||||||||    
T  34714389 cattttaaacccaactatacatgtgtagttgttttacacattgg 34714346  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 11615805 - 11615730
Alignment:
Q  52 gtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcacatttgataccca 127  Q
    ||||||||| || |||| |||| |||||| || ||||||  ||||||| ||||||||||||||||||||| |||||    
T  11615805 gtcatctcttttatatatccaacattttatctgttcataagtgatgtgagacttaaccactcacatttgaaaccca 11615730  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 11806493 - 11806433
Alignment:
Q  56 tctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcaca 116  Q
    |||||||| |||| ||||||||||||  |||||||||  ||||||||||||| ||||||||    
T  11806493 tctctcttatatatccaatattttacacattcatatacaatgtgggacttaatcactcaca 11806433  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 23270866 - 23270925
Alignment:
Q  60 tcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcacattt 119  Q
    |||| |||| ||||||||||||  ||||||| |  |||||||||||||||||||||||||    
T  23270866 tcttgtatatccaatattttacacattcataaacaatgtgggacttaaccactcacattt 23270925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 28979069 - 28978994
Alignment:
Q  52 gtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcacatttgataccca 127  Q
    |||| ||||||| |||| ||||||||||||  ||||||| ||  |||| |||||||||||||||| |||| |||||    
T  28979069 gtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaaccca 28978994  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 33730138 - 33730202
Alignment:
Q  49 tgggtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactc 113  Q
    ||||||| ||||||| |||| |||| |||| ||| |||||||   ||||||||||||||||||||    
T  33730138 tgggtcacctctcttttatatccaacatttaacccattcatagtcgatgtgggacttaaccactc 33730202  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 11199992 - 11199928
Alignment:
Q  52 gtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcaca 116  Q
    |||| ||||||| |||| |||| ||||||||||||||||    ||||| ||||||||||||||||    
T  11199992 gtcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaaccactcaca 11199928  T

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