View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21486_low_1 (Length: 741)

Name: NF21486_low_1
Description: NF21486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21486_low_1
NF21486_low_1
[»] chr1 (8 HSPs)
chr1 (276-718)||(51059270-51059718)
chr1 (78-218)||(422170-422311)
chr1 (78-175)||(7842356-7842453)
chr1 (78-216)||(28012889-28013029)
chr1 (113-169)||(15964322-15964378)
chr1 (78-122)||(17695267-17695310)
chr1 (112-172)||(16135544-16135604)
chr1 (113-172)||(13876686-13876745)
[»] chr8 (8 HSPs)
chr8 (78-212)||(1872639-1872773)
chr8 (113-170)||(34685997-34686054)
chr8 (113-169)||(7290941-7290997)
chr8 (116-172)||(28220800-28220856)
chr8 (113-172)||(3038627-3038686)
chr8 (113-172)||(18756434-18756493)
chr8 (116-175)||(23176551-23176610)
chr8 (113-162)||(6267282-6267331)
[»] chr3 (20 HSPs)
chr3 (78-218)||(5125407-5125547)
chr3 (78-218)||(48154407-48154542)
chr3 (78-208)||(29923095-29923226)
chr3 (78-208)||(29972248-29972379)
chr3 (78-179)||(11019665-11019766)
chr3 (107-218)||(36689668-36689780)
chr3 (80-208)||(42664052-42664180)
chr3 (78-179)||(54607839-54607939)
chr3 (78-203)||(12121188-12121318)
chr3 (79-142)||(47871176-47871239)
chr3 (87-175)||(4556944-4557032)
chr3 (605-683)||(34618080-34618158)
chr3 (113-172)||(19606681-19606740)
chr3 (113-172)||(32180518-32180577)
chr3 (113-172)||(47930434-47930493)
chr3 (113-175)||(26000754-26000816)
chr3 (113-167)||(40640403-40640457)
chr3 (116-172)||(45879254-45879310)
chr3 (82-145)||(435201-435263)
chr3 (113-162)||(38392405-38392454)
[»] chr6 (7 HSPs)
chr6 (78-244)||(4487750-4487911)
chr6 (82-244)||(25441684-25441841)
chr6 (78-158)||(26819695-26819776)
chr6 (78-125)||(18309160-18309206)
chr6 (111-203)||(18306616-18306709)
chr6 (116-176)||(11083918-11083978)
chr6 (113-162)||(34994053-34994102)
[»] chr2 (19 HSPs)
chr2 (77-244)||(7565481-7565645)
chr2 (76-216)||(6357006-6357147)
chr2 (78-198)||(43445301-43445422)
chr2 (78-246)||(32652592-32652755)
chr2 (78-198)||(59360-59481)
chr2 (78-165)||(40912464-40912545)
chr2 (78-172)||(27355155-27355249)
chr2 (78-172)||(45411920-45412014)
chr2 (115-172)||(15651072-15651129)
chr2 (113-169)||(18947380-18947436)
chr2 (113-172)||(17244837-17244896)
chr2 (113-171)||(19093676-19093734)
chr2 (119-216)||(41644101-41644199)
chr2 (113-169)||(19073574-19073630)
chr2 (116-172)||(41713386-41713442)
chr2 (121-172)||(38249905-38249956)
chr2 (116-175)||(42005611-42005670)
chr2 (113-175)||(27138785-27138847)
chr2 (113-170)||(18059131-18059188)
[»] scaffold0312 (1 HSPs)
scaffold0312 (78-218)||(8261-8402)
[»] chr4 (11 HSPs)
chr4 (76-216)||(14246377-14246518)
chr4 (78-244)||(5914964-5915125)
chr4 (78-198)||(5813434-5813554)
chr4 (78-125)||(22722042-22722089)
chr4 (92-169)||(28292430-28292507)
chr4 (84-145)||(47237449-47237510)
chr4 (117-170)||(54995015-54995068)
chr4 (113-172)||(9743812-9743871)
chr4 (116-172)||(17612559-17612615)
chr4 (113-172)||(2570700-2570759)
chr4 (113-198)||(2266597-2266682)
[»] chr7 (9 HSPs)
chr7 (78-244)||(25470614-25470775)
chr7 (78-216)||(8759424-8759562)
chr7 (113-172)||(22955079-22955138)
chr7 (113-172)||(49002446-49002505)
chr7 (113-194)||(4618499-4618581)
chr7 (116-169)||(5781740-5781793)
chr7 (113-169)||(40382111-40382167)
chr7 (113-172)||(10675026-10675085)
chr7 (113-175)||(7743152-7743214)
[»] chr5 (16 HSPs)
chr5 (78-244)||(8762890-8763051)
chr5 (78-244)||(13888300-13888461)
chr5 (78-204)||(26412017-26412144)
chr5 (122-218)||(3014672-3014769)
chr5 (80-172)||(10053787-10053881)
chr5 (78-215)||(33848070-33848208)
chr5 (78-158)||(33752489-33752569)
chr5 (110-213)||(12080459-12080563)
chr5 (82-194)||(12164054-12164171)
chr5 (113-172)||(22616715-22616774)
chr5 (100-203)||(13381110-13381214)
chr5 (113-172)||(27579248-27579307)
chr5 (113-172)||(33163737-33163796)
chr5 (113-175)||(25654571-25654633)
chr5 (113-203)||(29766537-29766628)
chr5 (117-162)||(41417356-41417401)
[»] scaffold0262 (1 HSPs)
scaffold0262 (78-169)||(11443-11534)
[»] scaffold0001 (1 HSPs)
scaffold0001 (82-172)||(65961-66051)
[»] scaffold0003 (1 HSPs)
scaffold0003 (78-145)||(107914-107981)
[»] scaffold0050 (1 HSPs)
scaffold0050 (113-172)||(5811-5870)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 276 - 718
Target Start/End: Original strand, 51059270 - 51059718
Alignment:
Q  276 attaagaatcataaaaaccagcagtaaataaggatatcttgcacaacacctatcttaacacaaatcacacggccaccttcaaatcatttggatgaaacga 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51059270 attaagaatcataaaaaccagcagtaaataaggatatcttgcacaacacctatcttaacacaaatcacacggccacctttaaatcatttggatgaaacga 51059369  T
Q  376 ttcttggatgaactctggattaccacgactcatgcatacccttaaaaaccgaaaggttaacaccnnnnnnnttctgattatggtcatgagctacaacctc 475  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||| |    
T  51059370 ttcttggatgaactctagattaccacgactcatgcatacccttaaaaaccgaaaggttaacacaaaaaaaattctgattatggtcacgagctacaacccc 51059469  T
Q  476 acaacttgttgtagtctcattgcaccatcctcaccccactaagcttcaagcaaccacgag------gggtccaagatatggacaaagaagcgttactacc 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      |||||||||| |||||||||||||||||||||||    
T  51059470 acaacttgttgtagtctcattgcaccatcctcaccccactaagcttcaagcaaccactagtcacaggggtccaagagatggacaaagaagcgttactacc 51059569  T
Q  570 agaagagacgggaaaaaacagacaaccctttggtgatttatcttcataatcgaagcttaaacaatcatagtagagttttggaacaccttattattactag 669  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51059570 agaagagacgggaaaaaacagacaaccctttggtgatttatctacataattgaagcttaaacaatcatagtagagttttggaacaccttattattactag 51059669  T
Q  670 tcatccacaaacatatggaagagtcgtcacaaaactaatcgatgatggt 718  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51059670 tcatccacaaacatatgaaagagtcgtcacaaaactaatcgatgatggt 51059718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 422170 - 422311
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatc-ac 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |||| ||||||  || ||||||||||| ||    
T  422170 attttaaataaaataagttaataaatcaaaagtaattaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagagtggtccatcaac 422269  T
Q  177 aaaacattagctgacatggcatgaacaactatgttattggtt 218  Q
    || |||||||||||||||  || ||| |||||||||||||||    
T  422270 aagacattagctgacatgatatcaactactatgttattggtt 422311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 7842356 - 7842453
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca 175  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||  |||| |||||||||||||  |||| |||| | ||||||||||| ||||    
T  7842356 attttaaataaaataagttaataaatcaaaagtaataaatattttttacgaggattgatttgtaataagataaagtttattcttacagtggtctatca 7842453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 28012889 - 28013029
Alignment:
Q  78 attttaaataaaataagttaataaatc-aaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca- 175  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| ||  ||||||||||||||||||  |||| |||| | || |  ||||| ||||     
T  28012889 attttaaataaaataagttaataaatcaaaaagtaattaatagtttttacgaggactgatttgtaataaggtaaagtttactcttgcgatggtctatcag 28012988  T
Q  176 caaaacattagctgacatggcatgaacaactatgttattgg 216  Q
    ||| ||| ||||||||||| ||| ||||| |||| ||||||    
T  28012989 caagacactagctgacatgacatcaacaattatgctattgg 28013029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 15964322 - 15964378
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggt 169  Q
    |||||||||| ||| ||||||||||||||||||  ||||||||||||||| ||||||    
T  15964322 ttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagagtggt 15964378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 17695310 - 17695267
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatatttt 122  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  17695310 attttaaataaaataagttaataaatcaaaa-taattaatatttt 17695267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 16135544 - 16135604
Alignment:
Q  112 attaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    ||||||||||||||| || ||||||||||||||   |||| |||||||||| |||||||||    
T  16135544 attaatattttgtatgagaactgatttgtaatagggtaaagtttagttttagagtggtcca 16135604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 13876745 - 13876686
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| || || ||||||||||||  |||| |||||||||| |||||||||    
T  13876745 ttaatattttgtatgagtaccgatttgtaataaggtaaagtttagttttagagtggtcca 13876686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 1872773 - 1872639
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| | ||||||||||    
T  1872773 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttataataaagtaaaatttggttttacaat-gtccatcaca 1872675  T
Q  178 aa-acattagctgacatggcatgaacaactatgtta 212  Q
    || ||||||||||||||||||| |||||||||||||    
T  1872674 aagacattagctgacatggcatcaacaactatgtta 1872639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 34685997 - 34686054
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtc 170  Q
    |||||||||||||| ||||||||||||||||||| |||| |||||| ||| |||||||    
T  34685997 ttaatattttgtatgaggactgatttgtaataaagtaaagtttagtcttagagtggtc 34686054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 7290941 - 7290997
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggt 169  Q
    |||||||||||||| |||| |||||||||||||  |||| |||||||||| ||||||    
T  7290941 ttaatattttgtatgaggattgatttgtaataagataaagtttagttttagagtggt 7290997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 28220856 - 28220800
Alignment:
Q  116 atattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    ||||||||||| ||||||||||||||||||  ||||  ||||||||| |||||||||    
T  28220856 atattttgtatgaggactgatttgtaataagataaagcttagttttagagtggtcca 28220800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 3038627 - 3038686
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| | || |||||||||||||  |||| |||||||||| |||||||||    
T  3038627 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagttttagagtggtcca 3038686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 18756493 - 18756434
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| ||||| ||||||||||||  ||||  ||||||||| |||||||||    
T  18756493 ttaatattttgtatgaggacagatttgtaataaggtaaagattagttttagagtggtcca 18756434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 23176610 - 23176551
Alignment:
Q  116 atattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca 175  Q
    ||||||||||| |||||| |||||||||||  ||||  ||||||||| ||||||||||||    
T  23176610 atattttgtatgaggactaatttgtaataagataaagcttagttttagagtggtccatca 23176551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 6267331 - 6267282
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagtttta 162  Q
    |||||||||||||| | ||||||||||||||||  |||| ||||||||||    
T  6267331 ttaatattttgtatgatgactgatttgtaataagataaagtttagtttta 6267282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 4e-43; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 5125407 - 5125547
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||  | | ||||||| ||||||||||||||||||    
T  5125407 attttaaataaaataagttaataaatcaaaagtaattaatattttgtaagaggactgatttgtaataagat-atatttagtcttacagtggtccatcaca 5125505  T
Q  178 aa-acattagctgacatggcatgaacaactatgttattggtt 218  Q
    || ||| ||||||||||||||| ||||| |||||||||||||    
T  5125506 aagacactagctgacatggcattaacaattatgttattggtt 5125547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 48154542 - 48154407
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    |||||||||||||||||||||||||||||      ||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  48154542 attttaaataaaataagttaataaatcaa------ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtccatcaca 48154449  T
Q  178 aa-acattagctgacatggcatgaacaactatgttattggtt 218  Q
    || ||| |||||||||||||||||||||||||| ||||||||    
T  48154448 aagacactagctgacatggcatgaacaactatgctattggtt 48154407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 29923226 - 29923095
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| ||| ||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  29923226 attttaaataaaataagttaataaatcaaaggttattaatattttgtacaagaacttatttgtaataaagtaaaatttagttttatagtggtccatcaca 29923127  T
Q  178 aa-acattagctgacatggcatgaacaactat 208  Q
    || || | |||||||||||||| || ||||||    
T  29923126 aagacgtcagctgacatggcatcaagaactat 29923095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 29972379 - 29972248
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| ||| ||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  29972379 attttaaataaaataagttaataaatcaaaggttattaatattttgtacaagaacttatttgtaataaagtaaaatttagttttatagtggtccatcaca 29972280  T
Q  178 aa-acattagctgacatggcatgaacaactat 208  Q
    || || | |||||||||||||| || ||||||    
T  29972279 aagacgtcagctgacatggcatcaagaactat 29972248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 11019665 - 11019766
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||  ||||||||||| ||| ||||||||||||||    
T  11019665 attttaaattaaataagttaataaatcaaaagtaattaatattttatacgaggactgatttgtaataagataaaatttagtcttagagtggtccatcaca 11019764  T
Q  178 aa 179  Q
    ||    
T  11019765 aa 11019766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 36689668 - 36689780
Alignment:
Q  107 aagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatc-acaaaacattagctgacatggcatgaacaac 205  Q
    |||||||||||||||||||| |||||| |||||||||||| |||| ||||||||||| |||||||||| |||| ||| ||||||||||| ||| ||||||    
T  36689668 aagtaattaatattttgtatgaggacttatttgtaataaagtaaagtttagttttacggtggtccatcaacaagacactagctgacatgacatcaacaac 36689767  T
Q  206 tatgttattggtt 218  Q
    |||||||||||||    
T  36689768 tatgttattggtt 36689780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 42664180 - 42664052
Alignment:
Q  80 tttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcacaaa 179  Q
    |||||||| ||| |||||||||||||||||||| |||| |||||||  ||||||||||||||||||| ||||||||||| ||||||||||  ||||||||    
T  42664180 tttaaatacaatcagttaataaatcaaaagtaaataat-ttttgtacgaggactgatttgtaataaagtaaaatttagtcttacagtggtttatcacaaa 42664082  T
Q  180 -acattagctgacatggcatgaacaactat 208  Q
     ||| ||||||||||| ||| |||||||||    
T  42664081 gacactagctgacatgacatcaacaactat 42664052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 54607839 - 54607939
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||  | | ||||||| ||||||||||||||||||    
T  54607839 attttaaataaaataagttaataaatcaaaagtaattaatattttgtaagaagactgatttgtaataagat-atatttagtcttacagtggtccatcaca 54607937  T
Q  178 aa 179  Q
    ||    
T  54607938 aa 54607939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 12121318 - 12121188
Alignment:
Q  78 attttaaataaaataagttaataaat----caaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccat 173  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||||||||||| | |||||||||||  |||| |||||| ||| |||||| ||     
T  12121318 attttaaatataataagttaataaataaatcaaaagtaattaatattttgtataaggagttatttgtaataaggtaaagtttagtcttatagtggttcac 12121219  T
Q  174 ca-caaaacattagctgacatggcatgaaca 203  Q
    || || |||||||||||||||||||| ||||    
T  12121218 catcagaacattagctgacatggcatcaaca 12121188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 47871176 - 47871239
Alignment:
Q  79 ttttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaa 142  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  47871176 ttttaaataaaataagttaataaatcaaaagtaattaatattttatatgaggactgatttgtaa 47871239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 4556944 - 4557032
Alignment:
Q  87 aaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca 175  Q
    ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||   ||| |||||  ||||| ||||||||||    
T  4556944 aaaataagttaataaatcaaaagtaattattgttttttataaggactgatttgtaataaggaaaagtttagacttacaatggtccatca 4557032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 605 - 683
Target Start/End: Complemental strand, 34618158 - 34618080
Alignment:
Q  605 atttatcttcataatcgaagcttaaacaatcatagtagagttttggaacaccttattattactagtcatccacaaacat 683  Q
    ||||||||||| |||||||||||||||||||||| |||| || ||||||||| ||| |||  |||||| ||||||||||    
T  34618158 atttatcttcacaatcgaagcttaaacaatcatactagaattctggaacaccctatcattgttagtcagccacaaacat 34618080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 19606740 - 19606681
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| ||||||||||||||||||  |||| |||||||||| |||||||||    
T  19606740 ttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtcca 19606681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 32180577 - 32180518
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| ||||||||||||||||||  |||| |||||||||| |||||||||    
T  32180577 ttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtcca 32180518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 47930493 - 47930434
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||||| ||||||||||||||||| ||||  ||||||||| |||||||||    
T  47930493 ttaatattttgtataatgactgatttgtaataaagtaaagcttagttttagagtggtcca 47930434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 26000754 - 26000816
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca 175  Q
    |||||||||||||| || |||||||||||||||| |||| |||||||||| ||||||| ||||    
T  26000754 ttaatattttgtatgagtactgatttgtaataaagtaaagtttagttttagagtggtctatca 26000816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 40640457 - 40640403
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtg 167  Q
    |||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||    
T  40640457 ttaatattttgtatgaggactgatttgtaataaaataaagtttagttttagagtg 40640403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 45879310 - 45879254
Alignment:
Q  116 atattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    ||||||||||| ||||||||||||||||||  |||| ||||| |||| |||||||||    
T  45879310 atattttgtatgaggactgatttgtaataaggtaaagtttagctttaaagtggtcca 45879254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 435201 - 435263
Alignment:
Q  82 taaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataa 145  Q
    ||||||||||||||||||||||| |||||||||||  |||| ||  |||||| |||||||||||    
T  435201 taaataaaataagttaataaatc-aaagtaattaaagttttctacgaggactaatttgtaataa 435263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 38392454 - 38392405
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagtttta 162  Q
    |||||||||||||  | ||||||||||||||||  |||||||||||||||    
T  38392454 ttaatattttgtaagatgactgatttgtaataatgtaaaatttagtttta 38392405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 78 - 244
Target Start/End: Complemental strand, 4487911 - 4487750
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    |||||||||||||||||||||||||||||      ||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  4487911 attttaaataaaataagttaataaatcaa------ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtccatcaca 4487818  T
Q  178 aa-acattagctgacatggcatgaacaactatgttattggttnnnnnnnntgacttttttaaaaaagt 244  Q
    || ||| |||||||||||||||||||||||||| ||||||||        ||||||||||||||||||    
T  4487817 aagacactagctgacatggcatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagt 4487750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 25441684 - 25441841
Alignment:
Q  82 taaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcacaaa-a 180  Q
    |||||||||||||||||||||||||      |||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |    
T  25441684 taaataaaataagttaataaatcaa------ttaatattttgtatgaggactgatttgtgataaagtaaaatttagtgttacagtggtccatcacaaaga 25441777  T
Q  181 cattagctgacatggcatgaacaactatgttattggttnnnnnnnntgacttttttaaaaaagt 244  Q
    || ||||| ||||| |||||||||||||| ||||||||        ||||||||||||||||||    
T  25441778 cactagctaacatgacatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagt 25441841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 26819776 - 26819695
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaat-aaattaaaatttagt 158  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || | || ||||||||| ||| |||||||||||    
T  26819776 attttaaataaaataagtttataaatcaaaagtaattaatattttgtacaatggcttatttgtaataaaagtaaaatttagt 26819695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 18309206 - 18309160
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgta 125  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  18309206 attttaaataaa-taagttaataaatcaaaagtaattaatattttgta 18309160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 18306709 - 18306616
Alignment:
Q  111 aattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca-caaaacattagctgacatggcatgaaca 203  Q
    |||||||||||||||  |||| |||||||||||||  ||||||||  | | |||||||||||||| ||| ||| ||||||||||||||| ||||    
T  18306709 aattaatattttgtacgaggattgatttgtaataaggtaaaatttgatctaacagtggtccatcagcaagacactagctgacatggcatcaaca 18306616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 11083978 - 11083918
Alignment:
Q  116 atattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcac 176  Q
    ||||||||||||||||||||||||||||||  ||||  ||||||||| ||||||| |||||    
T  11083978 atattttgtataaggactgatttgtaataagataaagcttagttttagagtggtctatcac 11083918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 34994053 - 34994102
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagtttta 162  Q
    |||||||||| |||||| |||||||||||||||  || ||||||||||||    
T  34994053 ttaatattttatataagaactgatttgtaataagatacaatttagtttta 34994102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 7565481 - 7565645
Alignment:
Q  77 gattttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaat--aaattaaaatttagttttacagtggtccatc 174  Q
    ||||||||||||||||||||||||||||||      |||||||||||||| ||||||||||||||||  ||| ||||||||||| |||||||||||||||    
T  7565481 gattttaaataaaataagttaataaatcaa------ttaatattttgtatgaggactgatttgtaataaaaaataaaatttagtgttacagtggtccatc 7565574  T
Q  175 acaaa-acattagctgacatggcatgaacaactatgttattggttnnnnnnnntgacttttttaaaaaagt 244  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||||        ||||||||||||||||||    
T  7565575 acaaagacactagctgacatggcatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagt 7565645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 6357006 - 6357147
Alignment:
Q  76 ggattttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca 175  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||| |||| ||||||| ||||||||||| ||| ||||||||||||    
T  6357006 ggattttaaataaaataagtttataaatcaaaagtaattaatattttgttcaaggacttatttataataaagtaaaatttagtcttatagtggtccatca 6357105  T
Q  176 caaa-acattagctgacatggcatgaacaactatgttattgg 216  Q
    |||| |||| |||||||||||||| || || |||| ||||||    
T  6357106 caaagacatcagctgacatggcattaagaattatgctattgg 6357147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 43445422 - 43445301
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccat-cac 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| ||||||||| |      
T  43445422 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactaatttgtaataaagtaaaatttagtcttacggtggtccatccga 43445323  T
Q  177 aaaacattagctgacatggcat 198  Q
    |||||||||  |||||||||||    
T  43445322 aaaacattaattgacatggcat 43445301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 78 - 246
Target Start/End: Original strand, 32652592 - 32652755
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    |||||||||||||||||||||||||||||      |||||||||||||| ||||||||||||||||||| ||||||||| | | | ||||||| ||||||    
T  32652592 attttaaataaaataagttaataaatcaa------ttaatattttgtatgaggactgatttgtaataaagtaaaatttaatgtcatagtggtctatcaca 32652685  T
Q  178 aa-acattagctgacatggcatgaacaactatgttattggttnnnnnnnntgacttttttaaaaaagtta 246  Q
    || ||| |||||||||||||||||||||||||| ||||||||        ||||||||||||||||||||    
T  32652686 aagacactagctgacatggcatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagtta 32652755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 59360 - 59481
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatc-ac 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||| ||||||  ||||||||||| ||||  ||||||||| |     
T  59360 attttaaataaaataagttaataaatcaaaagtaattaatattttgtacgatgactgatttataataagataaaatttagtcttacgttggtccatcaag 59459  T
Q  177 aaaacattagctgacatggcat 198  Q
    ||  ||||||||||||||||||    
T  59460 aagccattagctgacatggcat 59481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 40912545 - 40912464
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacag 165  Q
    |||||||||||||||||||||||||||||      |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  40912545 attttaaataaaataagttaataaatcaa------ttaatattttgtatgaggactgatttgtaataaagtaaaatttagtgttacag 40912464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 27355155 - 27355249
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||| |||||||| |||||||||||||||| || ||||||||||| | |||||||||||| | ||| ||| |||||| ||| |||||||||    
T  27355155 attttaaacaaaataagctaataaatcaaaagtagttgatattttgtattatgactgatttgtagtgaatgaaagtttagtcttagagtggtcca 27355249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 45412014 - 45411920
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||| |||||||| |||||||||||||||| || ||||||||||| | |||||||||||| | ||  |||||||||| ||| |||||||||    
T  45412014 attttaaacaaaataagctaataaatcaaaagtagttgatattttgtattatgactgatttgtagtgaaggaaaatttagtcttagagtggtcca 45411920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 15651072 - 15651129
Alignment:
Q  115 aatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||| ||||||||||||||||||| |||| |||| ||||| |||||||||    
T  15651072 aatattttgtatgaggactgatttgtaataaagtaaagtttaattttagagtggtcca 15651129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 18947436 - 18947380
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggt 169  Q
    |||||||||||||| ||||||||||||||||||  |||| |||||||||| ||||||    
T  18947436 ttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggt 18947380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 17244896 - 17244837
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| |||| |||||||||||||  |||| |||||||||| |||||||||    
T  17244896 ttaatattttgtatgaggagtgatttgtaataaggtaaagtttagttttagagtggtcca 17244837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 19093676 - 19093734
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcc 171  Q
    |||||||||||||  ||||||||||||||||||  |||| |||||||||| ||||||||    
T  19093676 ttaatattttgtaagaggactgatttgtaataaggtaaagtttagttttagagtggtcc 19093734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 41644101 - 41644199
Alignment:
Q  119 ttttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca-caaaacattagctgacatggcatgaacaactatgttattgg 216  Q
    |||||||| ||||||||||||||||||  || | |||||||||| ||||||||| || ||  ||| ||||||||||| ||| ||||| ||| |||||||    
T  41644101 ttttgtatgaggactgatttgtaataaggtagagtttagttttagagtggtccaccagcatgacactagctgacatgacatcaacaattatattattgg 41644199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 19073574 - 19073630
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggt 169  Q
    |||||||||| ||  ||||||||||||||||||  ||||||||||||||| ||||||    
T  19073574 ttaatattttatacgaggactgatttgtaataaggtaaaatttagttttaaagtggt 19073630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 41713386 - 41713442
Alignment:
Q  116 atattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    ||||||||| | ||||||||||||||||||  ||||| ||||||||| |||||||||    
T  41713386 atattttgtgtgaggactgatttgtaataagataaaacttagttttagagtggtcca 41713442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 38249956 - 38249905
Alignment:
Q  121 ttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||| ||||||||||||||| ||  ||||||||||||||| |||||||||    
T  38249956 ttgtatgaggactgatttgtaacaaggtaaaatttagttttagagtggtcca 38249905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 42005611 - 42005670
Alignment:
Q  116 atattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca 175  Q
    ||||||||||| ||  ||||||||||||||| ||||| ||| ||||| ||||||||||||    
T  42005611 atattttgtatgagagctgatttgtaataaaataaaacttaattttaaagtggtccatca 42005670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 27138847 - 27138785
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca 175  Q
    ||||||||||| || |||||| |||||||||||  ||||||||| ||||| ||| ||||||||    
T  27138847 ttaatattttgcatgaggacttatttgtaataaggtaaaatttaattttagagtagtccatca 27138785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 18059188 - 18059131
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtc 170  Q
    |||||||||||||| | ||||||||||||| ||  |||| |||||||||| |||||||    
T  18059188 ttaatattttgtatgatgactgatttgtaacaaggtaaagtttagttttagagtggtc 18059131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 8402 - 8261
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatc-ac 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |||| ||||||  || ||||||||||| ||    
T  8402 attttaaataaaataagttaataaatcaaaagtaattaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagagtggtccatcaac 8303  T
Q  177 aaaacattagctgacatggcatgaacaactatgttattggtt 218  Q
    || |||||||||||||||  || ||| |||||||||||||||    
T  8302 aagacattagctgacatgatatcaactactatgttattggtt 8261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 14246377 - 14246518
Alignment:
Q  76 ggattttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca 175  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||  ||||||| |||||||||||| ||||||||||| ||| ||||||||||||    
T  14246377 ggattttaaataaaataagtttataaatcaaaaataattaatattttgttcaaggacttatttgtaataaagtaaaatttagtcttatagtggtccatca 14246476  T
Q  176 caaa-acattagctgacatggcatgaacaactatgttattgg 216  Q
    |||| |||| |||||||||||||| || || |||| ||||||    
T  14246477 caaagacatcagctgacatggcattaagaattatgctattgg 14246518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 78 - 244
Target Start/End: Complemental strand, 5915125 - 5914964
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    |||||||||||||||||||||||||||||      |||||||||| ||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||    
T  5915125 attttaaataaaataagttaataaatcaa------ttaatattttttatgaggactaatttgtaataaagtaaaatttagtgttacagtggtccatcaca 5915032  T
Q  178 aa-acattagctgacatggcatgaacaactatgttattggttnnnnnnnntgacttttttaaaaaagt 244  Q
    || ||| |||||||||||| |||||||||| || ||||||||        ||||||||||||||||||    
T  5915031 aagacactagctgacatggtatgaacaactttgctattggttaaacaaaatgacttttttaaaaaagt 5914964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 5813434 - 5813554
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||| ||||||| | ||||||||| |||||||||||||||| |    
T  5813434 attttaaataaaataagttaataaatcaaaagtaattaatattttatacaatgacttatttttaataaagt-aaatttagtcttacagtggtccatcata 5813532  T
Q  178 aa-acattagctgacatggcat 198  Q
    || ||| || ||||||||||||    
T  5813533 aagacactaactgacatggcat 5813554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 22722089 - 22722042
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgta 125  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  22722089 attttaaataaaataagttaataaatcaaaagtaatcaatattttgta 22722042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 28292507 - 28292430
Alignment:
Q  92 aagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggt 169  Q
    ||||||||||||||||||||||||||||||||||| |  | |||||||||||||  |||| |||||| ||| ||||||    
T  28292507 aagttaataaatcaaaagtaattaatattttgtatgattattgatttgtaataaggtaaagtttagtcttagagtggt 28292430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 47237449 - 47237510
Alignment:
Q  84 aataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataa 145  Q
    ||||||||||||||||||||||||||||||||||  ||| ||| ||||| ||||||||||||    
T  47237449 aataaaataagttaataaatcaaaagtaattaatgctttctatgaggaccgatttgtaataa 47237510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 54995068 - 54995015
Alignment:
Q  117 tattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtc 170  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||    
T  54995068 tattttgtatgaggactgatttgtaataaagtaaaagttagttttagagtggtc 54995015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 9743812 - 9743871
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| ||||||| ||||||||||  ||||||||||||||| |||| ||||    
T  9743812 ttaatattttgtatgaggactggtttgtaataatgtaaaatttagttttagagtgatcca 9743871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 17612559 - 17612615
Alignment:
Q  116 atattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    ||||||| ||| |||||| |||||||||||  ||||||||||||||| |||||||||    
T  17612559 atattttctatgaggactaatttgtaataaggtaaaatttagttttagagtggtcca 17612615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 2570700 - 2570759
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||| | |||| |||||||||||||  |||| |||||||||| |||||||||    
T  2570700 ttaatattttgtttgaggaatgatttgtaataaggtaaagtttagttttagagtggtcca 2570759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 2266682 - 2266597
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca-caaaacattagctgacatggcat 198  Q
    |||||||||||||| ||||||||||||||||||  |||| |||| ||||| || |||||| || ||  ||| |||||||||||||||    
T  2266682 ttaatattttgtatgaggactgatttgtaataatgtaaagttta-ttttagaggggtccaccagcaggacactagctgacatggcat 2266597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 78 - 244
Target Start/End: Original strand, 25470614 - 25470775
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    |||||||||||||||||||||||||||||      |||||||||||||  ||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  25470614 attttaaataaaataagttaataaatcaa------ttaatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtccatcaca 25470707  T
Q  178 aa-acattagctgacatggcatgaacaactatgttattggttnnnnnnnntgacttttttaaaaaagt 244  Q
    || ||| | |||||||||||||||||||||||| ||||||||        ||||||||||||||||||    
T  25470708 aagacactcgctgacatggcatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagt 25470775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 8759424 - 8759562
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| |||  | | ||||| | |||||||||||||||| |    
T  8759424 attttaaataaaataagttaataaatcaaaagtaattaatattttgtaagaggaccgatttgtactaagat-atatttaatcttacagtggtccatcaaa 8759522  T
Q  178 aa-acattagctgacatggcatgaacaactatgttattgg 216  Q
    || ||| ||||||||||| ||| ||||| |||||||||||    
T  8759523 aagacactagctgacatgacatcaacaattatgttattgg 8759562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 22955138 - 22955079
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| || |||||||||||||||  |||| |||||||||| |||||||||    
T  22955138 ttaatattttgtatgagaactgatttgtaataaggtaaagtttagttttagagtggtcca 22955079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 49002446 - 49002505
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| |||||||||||||||| |  |||| |||||||||| |||||||||    
T  49002446 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 49002505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 4618581 - 4618499
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca-caaaacattagctgacatg 194  Q
    |||||||||||||| | |||||||||||| |||  |||| |||||||||| ||||||||| || || |||||||||| |||||    
T  4618581 ttaatattttgtatgatgactgatttgtagtaagataaagtttagttttagagtggtccaccagcagaacattagctcacatg 4618499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 5781740 - 5781793
Alignment:
Q  116 atattttgtataaggactgatttgtaataaattaaaatttagttttacagtggt 169  Q
    ||||||||||| | ||||||||||||||||| ||||| ||||||||| ||||||    
T  5781740 atattttgtatgatgactgatttgtaataaagtaaaacttagttttaaagtggt 5781793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 40382111 - 40382167
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggt 169  Q
    ||||||||||||||  |||||||||||||||||  |||| |||||||||| ||||||    
T  40382111 ttaatattttgtatgcggactgatttgtaataaggtaaagtttagttttagagtggt 40382167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 10675085 - 10675026
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| |||||| |||||||||||| |||| |||||| ||| |||| ||||    
T  10675085 ttaatattttgtatgaggactaatttgtaataaagtaaagtttagtcttagagtgatcca 10675026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 7743152 - 7743214
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca 175  Q
    |||||||||| ||| ||| ||| ||||||||||  |||| |||||||||| ||||||||||||    
T  7743152 ttaatattttatatgagggctgctttgtaataaggtaaagtttagttttagagtggtccatca 7743214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 78 - 244
Target Start/End: Complemental strand, 8763051 - 8762890
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    |||||||||||||||||||||||||||||      |||||||||||||  ||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  8763051 attttaaataaaataagttaataaatcaa------ttaatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtccatcaca 8762958  T
Q  178 aa-acattagctgacatggcatgaacaactatgttattggttnnnnnnnntgacttttttaaaaaagt 244  Q
    || ||| | |||||||||||||||||||||||| ||||||||        ||||||||||||||||||    
T  8762957 aagacactcgctgacatggcatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagt 8762890  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 78 - 244
Target Start/End: Original strand, 13888300 - 13888461
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    |||||||||||||||||||||||||||||      |||||||||||||| ||||||||||| ||||||| ||||||||||| |||||| |||||||||||    
T  13888300 attttaaataaaataagttaataaatcaa------ttaatattttgtatgaggactgatttataataaagtaaaatttagtgttacaggggtccatcaca 13888393  T
Q  178 aa-acattagctgacatggcatgaacaactatgttattggttnnnnnnnntgacttttttaaaaaagt 244  Q
    || ||| ||||||||||||||| ||||||||||  |||||||        ||||||||||||||||||    
T  13888394 aagacactagctgacatggcataaacaactatgcaattggttaaataaaatgacttttttaaaaaagt 13888461  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 26412017 - 26412144
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcaca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||  || |||||||| ||||| ||||||||||||    
T  26412017 attttaaataaaataagttaataaatcaaaagtaattaatattttatacgaggactgatttgcaataagatataatttagtcttacaatggtccatcaca 26412116  T
Q  178 aa-acattagctgacatggcatgaacaa 204  Q
    || | ||||||||||||| ||| |||||    
T  26412117 aagatattagctgacatgacatcaacaa 26412144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 3014672 - 3014769
Alignment:
Q  122 tgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatcacaaa-acattagctgacatggcatgaacaactatgttattggtt 218  Q
    ||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||    
T  3014672 tgtatgaggattgatttgtaataaagtaaaatttagtgttacagtggtccatcacaaagacactaactgacatggcatgaacaactatgctattggtt 3014769  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 10053787 - 10053881
Alignment:
Q  80 tttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactga--tttgtaataaattaaaatttagttttacagtggtcca 172  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||| |||||||||||  || |||||||||    
T  10053787 tttaaataaaataagttaataaatcaagagtaattaatattttgtatgaggactgatttttgtaataaagtaaaatttagtcgtagagtggtcca 10053881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 78 - 215
Target Start/End: Complemental strand, 33848208 - 33848070
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca-c 176  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||  |||| |||||| ||| ||| ||| |||| |    
T  33848208 attttaaataaaacaagttaataaatcaaaaataattaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagtagtctatcagc 33848109  T
Q  177 aaaacattagctgacatggcatgaacaactatgttattg 215  Q
    |  ||| ||||| ||||| ||| ||||| ||| ||||||    
T  33848108 atgacactagcttacatgtcattaacaattatattattg 33848070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 33752569 - 33752489
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagt 158  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||  |||| ||||||    
T  33752569 attttaaataaaacaagttaataaatcaaaaataattaatattttgtatgaggattgatttttaataaggtaaagtttagt 33752489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 12080563 - 12080459
Alignment:
Q  110 taattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca-caaaacattagctgacatggcatgaacaactat 208  Q
    |||| |||||||||||| ||||||||||||||||||  |||| |||||| ||| ||||||||| || ||  ||| ||||||||||| ||| ||||| |||    
T  12080563 taataaatattttgtatgaggactgatttgtaataaggtaaagtttagtcttaaagtggtccaccagcaggacactagctgacatgacatcaacaattat 12080464  T
Q  209 gttat 213  Q
    |||||    
T  12080463 gttat 12080459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 12164171 - 12164054
Alignment:
Q  82 taaataaaataagttaataaatcaaaagtaattaata----ttttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatc-ac 176  Q
    ||||| |||||||| |||||||||||||||||||||     |||| ||| |||||||||||||||||||  ||| ||||| |||||| ||||||| | ||    
T  12164171 taaattaaataagtaaataaatcaaaagtaattaattaatgttttttatgaggactgatttgtaataaaaaaaagtttagatttacaatggtccaccaac 12164072  T
Q  177 aaaacattagctgacatg 194  Q
    || ||| |||||||||||    
T  12164071 aatacactagctgacatg 12164054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 22616715 - 22616774
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| ||||||||||||||||||  |||| |||||||||| |||||||||    
T  22616715 ttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtcca 22616774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 13381110 - 13381214
Alignment:
Q  100 aaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca-caaaacattagctgacatggcat 198  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||||  |||| |||||  ||| || |||||| || || |||| ||||||||||| |||    
T  13381110 aaatcaaaagtaattaatattttgtatgaggattgatttataataaggtaaagtttagccttagagaggtccaccagcagaacactagctgacatgacat 13381209  T
Q  199 gaaca 203  Q
     ||||    
T  13381210 caaca 13381214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 27579248 - 27579307
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||| |||||| |||||||||||||  |||| |||||||||| |||||||||    
T  27579248 ttaatattttgtttaaggaatgatttgtaataaggtaaagtttagttttagagtggtcca 27579307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 33163737 - 33163796
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| | ||||||||||||||||  |||| |||||||||| |||||||||    
T  33163737 ttaatattttgtatgaagactgatttgtaataaggtaaagtttagttttaaagtggtcca 33163796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 25654571 - 25654633
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca 175  Q
    |||||| |||||| || ||||||||||||||||  |||| |||||||||| ||||||||||||    
T  25654571 ttaatagtttgtacaaagactgatttgtaataaggtaaagtttagttttagagtggtccatca 25654633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 29766628 - 29766537
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtccatca-caaaacattagctgacatggcatgaaca 203  Q
    |||||||||||||| || ||| |||||||||||  |||| |||||| ||| ||||||||||||  | |||| ||| ||||||||||| ||||    
T  29766628 ttaatattttgtatgagaactaatttgtaataaggtaaagtttagtcttagagtggtccatcagtagaacactagttgacatggcattaaca 29766537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 41417401 - 41417356
Alignment:
Q  117 tattttgtataaggactgatttgtaataaattaaaatttagtttta 162  Q
    |||||||||| | ||||||||||||||||  |||||||||||||||    
T  41417401 tattttgtatgatgactgatttgtaataaggtaaaatttagtttta 41417356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 11534 - 11443
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggt 169  Q
    |||||||| ||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||  ||||||||||| ||| ||||||    
T  11534 attttaaacaaaataagttaataaattataagtaattattattttgtatgaggactgatttgtaataagataaaatttagtcttagagtggt 11443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 65961 - 66051
Alignment:
Q  82 taaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||  |||| |||||| ||| |||||||||    
T  65961 taaataatataagttaataaatcaaaagtaattaatattttgtatgaggactaatttataataaggtaaagtttagtgttaaagtggtcca 66051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 107914 - 107981
Alignment:
Q  78 attttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttgtaataa 145  Q
    |||||||||||||||||||||||||| |||||||||| || |||| ||| | ||||||||||||||||    
T  107914 attttaaataaaataagttaataaattaaaagtaatttatgttttctatgaagactgatttgtaataa 107981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 5811 - 5870
Alignment:
Q  113 ttaatattttgtataaggactgatttgtaataaattaaaatttagttttacagtggtcca 172  Q
    |||||||||||||| || |||||||| ||||||  |||| |||||||||| |||||||||    
T  5811 ttaatattttgtatgagaactgatttataataaggtaaagtttagttttagagtggtcca 5870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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