View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21486_low_10 (Length: 334)
Name: NF21486_low_10
Description: NF21486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21486_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 2 - 319
Target Start/End: Complemental strand, 44109517 - 44109200
Alignment:
| Q |
2 |
gctgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggagaaacatgccataacatgttgatacagatccacattgatg |
101 |
Q |
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| T |
44109517 |
gctgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggagaaacatgccataacaggttgatacagatccacattgatg |
44109418 |
T |
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| Q |
102 |
ttttgcattctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagaggcaaattatttcttgagatgctga |
201 |
Q |
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| T |
44109417 |
ttttgcattctgtacagttattacaaaaattcaaatcactttcatccaactttgagagacatatagctttgaagaggcaaattatttcttgagatgcaga |
44109318 |
T |
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| Q |
202 |
cagttattaccaacctccaactattacacttcaagactccaatcttgtatcgattctaagtgtagatagcacattctcctctttctgtcggaaaatggtt |
301 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44109317 |
cagttattaccaacctccaactattacacttcacgactccaatcttgtatcgattctaagtgtagatagcacattctcctctttctgttggaaaatggtt |
44109218 |
T |
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| Q |
302 |
tggcaaaacatttagtat |
319 |
Q |
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| T |
44109217 |
tggcaaaacatttagtat |
44109200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 43760320 - 43760251
Alignment:
| Q |
108 |
attctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagag |
177 |
Q |
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| T |
43760320 |
attctgttcagttattacaaaaattcaaatcactttcatcaaactttgagaggcagatagctttgaagag |
43760251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 40450838 - 40450897
Alignment:
| Q |
4 |
tgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggaga |
63 |
Q |
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| T |
40450838 |
tgatagtgtaagagacttgacacttgcaagtccactcagtagcacaaccgaataaggaga |
40450897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 44146781 - 44146722
Alignment:
| Q |
259 |
aagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagta |
318 |
Q |
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||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||| |
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| T |
44146781 |
aagtgtagatagcacgttcttctctttctgtcgggaaatgctttggcaaaacatttagta |
44146722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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