View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21486_low_11 (Length: 333)
Name: NF21486_low_11
Description: NF21486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21486_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 29005574 - 29005893
Alignment:
| Q |
11 |
aagtgagagggaaaaaatgtgaaattttgtgttgtggttaagaatgagattaggggggtcatttatatagaaaatttcatgtgattgggaccaaaattga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29005574 |
aagtgagagggaaaaaatgtgaaattttgtgttgtggttaagaatgagattaggggggttatttatatagaaaatttcatgtgattgggaccaaaattga |
29005673 |
T |
|
| Q |
111 |
aggccacgttatatgtgaagagagtgggaccattaattttagtgactaagaagatgcagtgaaacttgtgtgtggaagttatagtataccaaggaagttg |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29005674 |
aggccacgttatatgtgaagagggtgggaccattaattttagtgactaagaagatgcagtgaaacttgtgtgtggaagttatagtataccaaggaagttg |
29005773 |
T |
|
| Q |
211 |
ctttgatagtactaaatgtgtgtgaaattgaacacatggttgttgtatagttgacctctaattattaatttcgtgtttcaggccaccatgtacatgttgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29005774 |
ctttgatagtactaaatgtgtgtgaaattgaacacatggttgttgtatagttgacctctaattattaatttcgtgtttcaggccaccatgtacatgttgt |
29005873 |
T |
|
| Q |
311 |
ggtataacacaactatgatatt |
332 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
29005874 |
ggtata--acaactatgatatt |
29005893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University