View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21486_low_12 (Length: 292)

Name: NF21486_low_12
Description: NF21486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21486_low_12
NF21486_low_12
[»] chr7 (11 HSPs)
chr7 (18-273)||(4452290-4452545)
chr7 (13-273)||(2369561-2369821)
chr7 (163-286)||(4452757-4452878)
chr7 (104-249)||(11356339-11356484)
chr7 (104-249)||(44222009-44222154)
chr7 (74-249)||(23941343-23941518)
chr7 (134-249)||(13070474-13070579)
chr7 (136-249)||(31730907-31731021)
chr7 (125-249)||(4278602-4278727)
chr7 (208-273)||(10526854-10526919)
chr7 (138-236)||(12868627-12868725)
[»] chr2 (11 HSPs)
chr2 (20-267)||(35000426-35000672)
chr2 (20-270)||(31133307-31133554)
chr2 (109-270)||(8277182-8277343)
chr2 (126-273)||(22787791-22787939)
chr2 (123-249)||(20927518-20927644)
chr2 (123-273)||(11573827-11573984)
chr2 (134-249)||(9829368-9829483)
chr2 (182-249)||(20500464-20500533)
chr2 (182-248)||(20500548-20500616)
chr2 (20-54)||(8277095-8277129)
chr2 (20-48)||(11574047-11574075)
[»] chr1 (13 HSPs)
chr1 (22-273)||(25817592-25817842)
chr1 (28-250)||(3368236-3368458)
chr1 (123-273)||(33402879-33403029)
chr1 (109-267)||(48025738-48025895)
chr1 (123-273)||(35577259-35577408)
chr1 (104-249)||(23941635-23941780)
chr1 (134-249)||(16315151-16315266)
chr1 (139-249)||(12063560-12063670)
chr1 (145-249)||(30704342-30704446)
chr1 (20-54)||(33402778-33402812)
chr1 (23-54)||(48025948-48025979)
chr1 (20-54)||(35577158-35577192)
chr1 (142-223)||(18426397-18426478)
[»] chr4 (22 HSPs)
chr4 (123-273)||(36499100-36499250)
chr4 (123-275)||(24972582-24972733)
chr4 (123-256)||(23283372-23283505)
chr4 (131-270)||(55523922-55524061)
chr4 (123-249)||(22182154-22182280)
chr4 (123-273)||(45246766-45246916)
chr4 (142-273)||(12586379-12586510)
chr4 (151-249)||(156887-156985)
chr4 (104-249)||(50008791-50008936)
chr4 (125-249)||(43210007-43210129)
chr4 (104-249)||(50336186-50336331)
chr4 (125-249)||(41418911-41419035)
chr4 (134-249)||(1938580-1938695)
chr4 (134-249)||(33990762-33990877)
chr4 (104-249)||(12656515-12656667)
chr4 (152-236)||(6599384-6599469)
chr4 (20-54)||(12586589-12586623)
chr4 (20-54)||(45246666-45246700)
chr4 (214-249)||(5534180-5534215)
chr4 (211-250)||(29348911-29348950)
chr4 (20-54)||(55524127-55524161)
chr4 (26-54)||(36499308-36499336)
[»] chr5 (16 HSPs)
chr5 (123-267)||(38739536-38739679)
chr5 (123-273)||(30491528-30491679)
chr5 (123-273)||(763118-763267)
chr5 (109-255)||(34017398-34017544)
chr5 (104-249)||(32910585-32910730)
chr5 (104-249)||(29195821-29195966)
chr5 (154-273)||(33143948-33144068)
chr5 (164-250)||(16109318-16109403)
chr5 (134-235)||(15235063-15235165)
chr5 (125-249)||(20887682-20887806)
chr5 (161-249)||(8736460-8736550)
chr5 (123-267)||(5504917-5505055)
chr5 (171-249)||(35050312-35050390)
chr5 (20-54)||(5505122-5505156)
chr5 (20-54)||(34017320-34017354)
chr5 (20-52)||(30491427-30491459)
[»] chr3 (18 HSPs)
chr3 (123-273)||(7666702-7666852)
chr3 (109-273)||(19866927-19867091)
chr3 (123-273)||(35995280-35995430)
chr3 (104-249)||(54335654-54335799)
chr3 (109-273)||(35063110-35063273)
chr3 (134-249)||(30528497-30528612)
chr3 (150-267)||(34086601-34086718)
chr3 (104-249)||(30933789-30933934)
chr3 (125-249)||(14443735-14443859)
chr3 (139-249)||(11916930-11917040)
chr3 (104-249)||(20518043-20518188)
chr3 (134-249)||(53767224-53767339)
chr3 (123-230)||(39649718-39649825)
chr3 (20-54)||(7666601-7666635)
chr3 (20-54)||(34086471-34086505)
chr3 (20-54)||(35063326-35063360)
chr3 (20-54)||(35995488-35995522)
chr3 (20-54)||(39649618-39649652)
[»] chr6 (6 HSPs)
chr6 (123-273)||(31522358-31522508)
chr6 (123-273)||(32275556-32275706)
chr6 (134-249)||(13543678-13543792)
chr6 (142-236)||(8518521-8518615)
chr6 (177-249)||(7452411-7452484)
chr6 (20-54)||(4321443-4321477)
[»] scaffold0037 (1 HSPs)
scaffold0037 (129-268)||(38128-38266)
[»] chr8 (13 HSPs)
chr8 (28-250)||(2807075-2807296)
chr8 (138-249)||(24626061-24626172)
chr8 (126-273)||(34276386-34276532)
chr8 (134-249)||(13868202-13868319)
chr8 (123-222)||(32075052-32075151)
chr8 (119-249)||(14189780-14189912)
chr8 (208-273)||(33228311-33228376)
chr8 (182-249)||(41601120-41601187)
chr8 (195-249)||(20534367-20534421)
chr8 (154-248)||(27188222-27188318)
chr8 (123-199)||(20532104-20532180)
chr8 (20-54)||(34276602-34276636)
chr8 (213-249)||(22661899-22661935)
[»] scaffold1063 (1 HSPs)
scaffold1063 (123-271)||(1620-1769)
[»] scaffold0599 (1 HSPs)
scaffold0599 (139-249)||(8681-8791)
[»] scaffold1050 (1 HSPs)
scaffold1050 (151-249)||(2061-2159)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 4452290 - 4452545
Alignment:
Q  18 catacaactagcgtgagttaactcacgctgagccctatcacctagttcaaaaaactgacgaaccttgcagaaaaatcaggtaaaacagattagttttgag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4452290 catacaactagcgtgagttaactcacgctgagccctatcacctagttcaaaaaactgacgaaccttgcagaaaaaccaggtaaaacagattagttttgag 4452389  T
Q  118 aatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4452390 aatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcact 4452489  T
Q  218 ttttgggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4452490 ttttgggtttttggagatggagggaaagaaaaaatggagttgtgtggttgcctgct 4452545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 2369561 - 2369821
Alignment:
Q  13 catcacatacaactagcgtgagttaactcacgctgagccctatcacctagttcaaaaaactgacgaaccttgcagaaaaatcaggtaaaacagatt-agt 111  Q
    |||| |||||||||||| |||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |||  ||||  |||| |||    
T  2369561 catcccatacaactagcatgagttcactcacactgagccctaccacctagttcaaaaaaatgacgaaccttgcagaaaaa-cagcaaaaaacgattgagt 2369659  T
Q  112 tttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaatt 211  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||    
T  2369660 tttgaggatacattacctgttctttgatgcttgatgagtgtagaaacttgcttcatgacgatttgcaatgatttggaatgaagattttgacccaaaaatt 2369759  T
Q  212 cgcactttttgggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2369760 cacactttttgggtttttagaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 2369821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 4452757 - 4452878
Alignment:
Q  163 ttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggagggaaagaaaaaatggagttgtgt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||  |||    
T  4452757 ttcctgatgatttgcaattatttggaatgaagattttgacccaaaaatttgcactttttaggtttttggaggtggagggaaagaaaaaatggagt--tgt 4452854  T
Q  263 ggttgcctgctagatattcttcga 286  Q
    ||||||||||| ||| || |||||    
T  4452855 ggttgcctgctggattttgttcga 4452878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 104 - 249
Target Start/End: Complemental strand, 11356484 - 11356339
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||| | |||||| | |||| ||||||||||| |||||||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  11356484 agatgagttttgatgatacaatacctgatatttggtgcttgatgaacgtagaaacttgcttcctgatgatttgcaatgatttgggatgagaattttgacc 11356385  T
Q  204 caaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  11356384 caaaaaatcgcactttttgggtttttgaaggtggagggaaagaaaa 11356339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 104 - 249
Target Start/End: Complemental strand, 44222154 - 44222009
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||| | |||||| | |||||||||||||||  ||||||||||||||||||| |||||||||| |||||| |||| ||||||||||    
T  44222154 agataagttttgatgatacaatacctgatatttgatgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacc 44222055  T
Q  204 caaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  44222054 caaaaaatcgcactttttgggtttttgaaggtggagggaaagaaaa 44222009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 249
Target Start/End: Complemental strand, 23941518 - 23941343
Alignment:
Q  74 gacgaaccttgcagaaaaatcaggtaaaacagattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgat 173  Q
    ||||||||  ||| |||||||||  |||  |||| ||||||||  ||| | |||||| | |||| ||||||||||  ||||||||||||||| ||| |||    
T  23941518 gacgaaccaagcacaaaaatcagcaaaatgagatgagttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcatgacgat 23941419  T
Q  174 ttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    ||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  23941418 ttgcaatgatttgggatgaggattttgaccaaaaaattcgcactttttgggtttttgaaggtggagggaaagaaaa 23941343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 13070474 - 13070579
Alignment:
Q  134 tttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggag 233  Q
    ||||||||||||||  |||||||||||||||| |||||||||          |||||||||||||||||||||||| || ||||||||||||||||||||    
T  13070474 tttgatgcttgatgggtgtagaaacttgcttcatgatgattt----------ggaatgaagattttgacccaaaaaatcacactttttgggtttttggag 13070563  T
Q  234 gtggagggaaagaaaa 249  Q
    ||||||||||||||||    
T  13070564 gtggagggaaagaaaa 13070579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 31731021 - 31730907
Alignment:
Q  136 tgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggt 235  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||| || || ||||||||| ||||||| | |||||||||| |||||||||||||||||    
T  31731021 tgatgtttgatgagtgtagaaacttgcttcctgacgatttgcaatgatatgaaatgaagatattgaccc-acaattcgcactctttgggtttttggaggt 31730923  T
Q  236 g--gagggaaagaaaa 249  Q
    |  |||||||||||||    
T  31730922 ggagagggaaagaaaa 31730907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 4278727 - 4278602
Alignment:
Q  125 tacctgttctttgatgcttgatgaatgtagaaacttgctt-cctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgg 223  Q
    |||||| | |||| ||||||||||  |||||||||| ||| ||||| ||| |||||| |||||| |||| |||||||||| |||||||| ||||||| ||    
T  4278727 tacctgatatttggtgcttgatgagcgtagaaacttactttcctgacgatgtgcaatgatttgggatgaggattttgaccaaaaaattctcacttttggg 4278628  T
Q  224 gtttttggaggtggagggaaagaaaa 249  Q
    ||||||| ||||||||||||||||||    
T  4278627 gtttttgaaggtggagggaaagaaaa 4278602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 10526854 - 10526919
Alignment:
Q  208 aattcgcactttttgggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10526854 aattcacactttttggatttttggaggtggagggaaagaaaaaatggagctttgtggttgcctgct 10526919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 12868725 - 12868627
Alignment:
Q  138 atgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc-caaaaattcgcactttttgggtttttggaggtg 236  Q
    ||||||||||| ||||||||||| |||||| | |||||| ||| ||||| ||||||||||||||||  ||||||| |||| |||||||||||||||||||    
T  12868725 atgcttgatgagtgtagaaacttacttcctcacgatttgtaatgatttgaaatgaagattttgaccaaaaaaatttgcac-ttttgggtttttggaggtg 12868627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 35000672 - 35000426
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagccctatcacctagttcaaaaaactgacgaaccttgcagaaaaatcaggtaaaacagattagttttgagaa 119  Q
    ||||||||||||||||||||||||||| ||||| |||| ||| || ||||| ||||||| ||  |||   ||| |||| ||| | ||| ||||||| | |    
T  35000672 tacaactagcgtgagttaactcacgctaagccccatcatctactttaaaaa-ctgacgagccaagcaattaaaccaggaaaatcggatgagttttgggga 35000574  T
Q  120 tatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcacttt 219  Q
    || |||||||||||||||||||||||||| |||| | ||||||||||||  |||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  35000573 tacattacctgttctttgatgcttgatgagtgtatagacttgcttcctggcgatttgcaatgatttggaacgaagattttgacccaaaagttcgcacttt 35000474  T
Q  220 ttgggtttttggaggtggagggaaagaaaaaatggagttgtgtggttg 267  Q
    |||||||||| |||||||| ||||||||||||||||  ||||||||||    
T  35000473 ttgggtttttagaggtggaaggaaagaaaaaatggacatgtgtggttg 35000426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 31133554 - 31133307
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagccctatcacctagttcaaaaaactgacgaaccttgcagaaaaatcaggtaaaacagattagttttgagaa 119  Q
    ||||||||||||||||||||||||||| | |||||   |||| | |||||||   ||| | ||  ||||| || |||  |||||  || ||||||||       
T  31133554 tacaactagcgtgagttaactcacgctaaaccctacaccctactgcaaaaaa---acgtaactgccagaataaccagcaaaaacgaatgagttttgacgg 31133458  T
Q  120 tatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcacttt 219  Q
    || |||||||||||||||||||||||||||  |||||||||| ||  | | |||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  31133457 tacattacctgttctttgatgcttgatgaacatagaaacttgttttataacgatttgcaataatttggaatgaagattttgacccaaaaattctcacttt 31133358  T
Q  220 ttgggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcct 270  Q
    ||||||||||||||||||||||| | ||||||||||| | |||||||||||    
T  31133357 ttgggtttttggaggtggagggataaaaaaaatggagctttgtggttgcct 31133307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 109 - 270
Target Start/End: Original strand, 8277182 - 8277343
Alignment:
Q  109 agttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaa 208  Q
    ||||||||  ||| ||||||||||||||||| ||||||||  ||||||||||| ||||||| |||||||||| |||||||||||||||||| ||||||||    
T  8277182 agttttgacgatacattacctgttctttgatacttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaa 8277281  T
Q  209 attcgcactttttgggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcct 270  Q
     || ||| ||||  |||||||||||||||||||||||||||||||||| | |||||||||||    
T  8277282 ttttgcatttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcct 8277343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 126 - 273
Target Start/End: Original strand, 22787791 - 22787939
Alignment:
Q  126 acctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggt 225  Q
    |||| |||| |||||||||||||  |||||||||| |||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  22787791 acctattctatgatgcttgatgagcgtagaaacttacttcatgacgatttgcaatgatttagaatgaagattttgacccaaaaattcgcactttatgggt 22787890  T
Q  226 ttttggaggtggagggaaag-aaaaaatggagttgtgtggttgcctgct 273  Q
    |||||||||||||||||||| |||||||||||  ||||||||| |||||    
T  22787891 ttttggaggtggagggaaagaaaaaaatggagaagtgtggttgtctgct 22787939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 123 - 249
Target Start/End: Original strand, 20927518 - 20927644
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    |||||||| | |||||||||||||||  ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| || ||||||||||    
T  20927518 attacctgatatttgatgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttg 20927617  T
Q  223 ggtttttggaggtggagggaaagaaaa 249  Q
    |||||||| ||||||||||||||||||    
T  20927618 ggtttttgaaggtggagggaaagaaaa 20927644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 123 - 273
Target Start/End: Complemental strand, 11573984 - 11573827
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaat-------tcgca 215  Q
    ||||||||||||||||||||||||||   |||||||||| ||||||| |||||||||| |||||||||||||||||| |||||||| |       |||||    
T  11573984 attacctgttctttgatgcttgatgagcatagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacatcgca 11573885  T
Q  216 ctttttgggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  11573884 cttttggggtttttggaggtggagggaaagaaaaaatggagctttgtggttgtctgct 11573827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 9829368 - 9829483
Alignment:
Q  134 tttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggag 233  Q
    |||| ||||||||||  ||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||| ||    
T  9829368 tttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaattcgcactttttgagtttttgaag 9829467  T
Q  234 gtggagggaaagaaaa 249  Q
    ||||||||||||||||    
T  9829468 gtggagggaaagaaaa 9829483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 20500533 - 20500464
Alignment:
Q  182 atttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtg--gagggaaagaaaa 249  Q
    ||||| |||||||||||||||||||||| |||||||||||||  ||||||| |||  |||||||||||||    
T  20500533 atttgaaatgaagattttgacccaaaaaatcgcactttttggaattttggaagtgaagagggaaagaaaa 20500464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 20500616 - 20500548
Alignment:
Q  182 atttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtg--gagggaaagaaa 248  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| ||||||| |||  ||||||||||||    
T  20500616 atttgaaatgaagattttgacccaaaaaatcgcattttttgggattttggaagtgaagagggaaagaaa 20500548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 8277095 - 8277129
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||| ||||||||||||||||||||||||||    
T  8277095 tacaactaacgtgagttaactcacgctgagcccta 8277129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 11574075 - 11574047
Alignment:
Q  20 tacaactagcgtgagttaactcacgctga 48  Q
    |||||||||||||||||||||||||||||    
T  11574075 tacaactagcgtgagttaactcacgctga 11574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 273
Target Start/End: Complemental strand, 25817842 - 25817592
Alignment:
Q  22 caactagcgtgagttaactcacgctgagccctatcacctagttcaaaaaactgacgaaccttgcagaaaaatcaggtaaaacagattagttttgagaata 121  Q
    ||||||| ||||||| ||||||||| | |||||||||||| |  |||||| ||||| |  ||||||||||| |||| ||||  |||  |||||||   ||    
T  25817842 caactagtgtgagtttactcacgctcaaccctatcacctactgaaaaaaa-tgacgtaagttgcagaaaaaccagggaaaaaggatgcgttttgacggta 25817744  T
Q  122 tattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcacttttt 221  Q
     |||||||||||| |||||||||| ||  | ||||||||||||  ||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||    
T  25817743 cattacctgttctatgatgcttgacgagcgcagaaacttgctttatgacgatttgcaatgatttggaacgaagattttgacccaaaaattcacacttttt 25817644  T
Q  222 gggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  25817643 gggtttttggaggtggagggaaagaaaaaatggagctgtgtggttgtctgct 25817592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 3368458 - 3368236
Alignment:
Q  28 gcgtgagttaactcacgctgagccctatcacctagttcaaaaaactgacgaaccttgcagaaaaatcaggtaaaacagattagttttgagaatatattac 127  Q
    ||||||||||||||||||| ||||||||    ||| |||||||| |||||||||  |||||||||  ||  |||||  || ||||||||  ||| |||||    
T  3368458 gcgtgagttaactcacgctaagccctatactgtagctcaaaaaaatgacgaaccaagcagaaaaactagcaaaaacgaatgagttttgatgatacattac 3368359  T
Q  128 ctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggttt 227  Q
     || | ||||||||||||| | ||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||| | |||||||||||||||||    
T  3368358 ttgatgtttgatgcttgataagtgtagaaacttgcttcctgatgatttgcaatgattatgaatgaagattttgacccaaataatcgcactttttgggttt 3368259  T
Q  228 ttggaggtggagggaaagaaaaa 250  Q
    |||||||||||||||||||||||    
T  3368258 ttggaggtggagggaaagaaaaa 3368236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 33402879 - 33403029
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||||||||||||||||| ||||  ||||||||||| |||| || |||||||||| |||||||||||||||||| |||||||| ||||||||||| |    
T  33402879 attacctgttctttgatgcttaatgagcgtagaaacttgtttccggaagatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttttgg 33402978  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    ||||||| ||||||||| |||||||||||||||||| | ||||||||||||    
T  33402979 ggtttttagaggtggagcgaaagaaaaaatggagttttatggttgcctgct 33403029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 48025895 - 48025738
Alignment:
Q  109 agttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaa 208  Q
    |||||||| | || ||||||||||||||||||||||||||   |||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||    
T  48025895 agttttgacagtacattacctgttctttgatgcttgatgagcatagaaacttgtttcttgatgatttgcaatgatttggaatgaagatttttacccaaaa 48025796  T
Q  209 attcgcactttttgggtttttggaggtggagggaaagaaaaaatggagttgtgtggttg 267  Q
     ||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  48025795 tttcgcac-ttttggggttttggaggtggagggaaagaaaaaatggagctttgtggttg 48025738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 35577259 - 35577408
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||| | |||||||||| |||||||||||  ||||| ||| |||| ||||||||||| |    
T  35577259 attacctgttctttgatgcttgatgagcgtagaaacttgtttcctaacgatttgcaatgatttggaatgagtatttttaccaaaaatttcgcacttttgg 35577358  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    |||||||||||||||| | |||||||||| |||| | ||||||||||||||    
T  35577359 ggtttttggaggtggacgaaaagaaaaaa-ggagctctgtggttgcctgct 35577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 249
Target Start/End: Complemental strand, 23941780 - 23941635
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||| | |||||| | |||| ||||||||||| ||||||||||||||||||| |||||||||| |||||| |||| | ||||||||    
T  23941780 agatgagttttgatgatacaatacctgatatttggtgcttgatgaacgtagaaacttgcttcctgacgatttgcaatgatttgggatgagggttttgacc 23941681  T
Q  204 caaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||    
T  23941680 caaaaaattgcactttttgggtttttgaaggtggagggaaagaaaa 23941635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 16315151 - 16315266
Alignment:
Q  134 tttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggag 233  Q
    |||| ||||||||||  ||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||| || ||    
T  16315151 tttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaagattttgatccaaaaaatcgcactttttgggtttgtgaag 16315250  T
Q  234 gtggagggaaagaaaa 249  Q
    ||||||||||||||||    
T  16315251 gtggagggaaagaaaa 16315266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 12063670 - 12063560
Alignment:
Q  139 tgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtgga 238  Q
    |||||||||| |||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||| || ||||||||||||||||| |||  ||    
T  12063670 tgcttgatgagtgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcacactttttgggtttttgaaggaaga 12063571  T
Q  239 gggaaagaaaa 249  Q
    |||||||||||    
T  12063570 gggaaagaaaa 12063560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 30704342 - 30704446
Alignment:
Q  145 atgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggagggaaa 244  Q
    |||| |||||||||||||||||||| |||||||||| |||||  ||||  ||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  30704342 atgagtgtagaaacttgcttcctgacgatttgcaatgatttgagatgagaattttgacccaaaaagtcgcactttttgggtttttgaaggtggagggaaa 30704441  T
Q  245 gaaaa 249  Q
    |||||    
T  30704442 gaaaa 30704446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 33402778 - 33402812
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||||||||||||||    
T  33402778 tacaactagcgtgagttaactcacgctgagcccta 33402812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 54
Target Start/End: Complemental strand, 48025979 - 48025948
Alignment:
Q  23 aactagcgtgagttaactcacgctgagcccta 54  Q
    ||||||||||||||||||||||||||||||||    
T  48025979 aactagcgtgagttaactcacgctgagcccta 48025948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 35577158 - 35577192
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    ||||||||||||||||||| |||||||||||||||    
T  35577158 tacaactagcgtgagttaattcacgctgagcccta 35577192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 18426397 - 18426478
Alignment:
Q  142 ttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgg 223  Q
    |||||||  ||||||||||||||||||| |||||||||| ||||  | | |||||||||   ||||| |||| |||||||||    
T  18426397 ttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttcaagttaagattttgctacaaaatttcgtactttttgg 18426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 123 - 273
Target Start/End: Complemental strand, 36499250 - 36499100
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||||||||||||||||||||||  ||||||| ||| ||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||| |    
T  36499250 attacctgttctttgatgcttgatgagcgtagaaatttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttttgg 36499151  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  36499150 ggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctgct 36499100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 24972733 - 24972582
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    |||||||||| |||||||||||||||  ||||||||||| ||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||| |    
T  24972733 attacctgttatttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttttgg 24972634  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgctag 275  Q
    |||||||||||||||||||||||| ||||||||| | |||||||| |||||||    
T  24972633 ggtttttggaggtggagggaaaga-aaaatggagctttgtggttgtctgctag 24972582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 123 - 256
Target Start/End: Complemental strand, 23283505 - 23283372
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||| |||| ||||||||||||| |||||||| || |||||||| |    
T  23283505 attacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttagaatgaagatttttacccaaaattttgcacttttgg 23283406  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggag 256  Q
    ||||||||||||||||||||||||||||||||||    
T  23283405 ggtttttggaggtggagggaaagaaaaaatggag 23283372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 55524061 - 55523922
Alignment:
Q  131 ttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttg 230  Q
    ||||||||||||||||||  ||||||||||| ||||||| ||||| |||| |||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  55524061 ttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttacaatgatttggaatgaagatttttacccaaaatttcgcacttttggggtttttg 55523962  T
Q  231 gaggtggagggaaagaaaaaatggagttgtgtggttgcct 270  Q
     ||||||||||||||||||||||||| | |||||||||||    
T  55523961 caggtggagggaaagaaaaaatggagctttgtggttgcct 55523922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 123 - 249
Target Start/End: Original strand, 22182154 - 22182280
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    |||||||| | |||||||||||||||  ||||||||||||||| | | |||||||||| |||||||||||||||||||||| ||||| | ||||||||||    
T  22182154 attacctgatatttgatgcttgatgagcgtagaaacttgcttcttaacgatttgcaatgatttggaatgaagattttgacctaaaaaattgcactttttg 22182253  T
Q  223 ggtttttggaggtggagggaaagaaaa 249  Q
    |||||||||||||||||||||||||||    
T  22182254 ggtttttggaggtggagggaaagaaaa 22182280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 45246766 - 45246916
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||||||||||||||||||||||  || |||||||| ||| ||| |||||||||| |||||||||||||||||| |||||||| ||| ||||||| |    
T  45246766 attacctgttctttgatgcttgatgagcgtggaaacttgtttcttgacgatttgcaatgatttggaatgaagatttttacccaaaatttcacacttttag 45246865  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
     |||||||||||||||||||||| |||| | ||| | ||||||||||||||    
T  45246866 agtttttggaggtggagggaaaggaaaagtcgagctttgtggttgcctgct 45246916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 12586510 - 12586379
Alignment:
Q  142 ttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggaggg 241  Q
    |||||||  ||||||||||  ||||||| |||||||||| |||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||    
T  12586510 ttgatgagcgtagaaacttatttcctgacgatttgcaatgatttggaatgaagatttttacccaaaattttgcacttttggggtttttggaggtggaggg 12586411  T
Q  242 aaagaaaaaatggagttgtgtggttgcctgct 273  Q
    ||||||||||||||||| | ||||||| ||||    
T  12586410 aaagaaaaaatggagttttatggttgcatgct 12586379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 156887 - 156985
Alignment:
Q  151 gtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    ||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  156887 gtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaattcgcactttttgggtttttgaaggtggagggaaagaaaa 156985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 104 - 249
Target Start/End: Original strand, 50008791 - 50008936
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||| | |||||| | |||| ||||||||||  ||||||||||||||||||| |||||||||| |||||| |||| ||||||||||    
T  50008791 agatgagttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacc 50008890  T
Q  204 caaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||| ||||||||||| |||||||| |||| |||||||||||||    
T  50008891 caaaaaatcgcacttttttggtttttgaaggtcgagggaaagaaaa 50008936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 43210007 - 43210129
Alignment:
Q  125 tacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttggg 224  Q
    |||||| | |||| ||||||||||  ||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||| ||||||||||  ||    
T  43210007 tacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgcactttt--gg 43210104  T
Q  225 tttttggaggtggagggaaagaaaa 249  Q
    |||||| ||||||||||||||||||    
T  43210105 tttttgaaggtggagggaaagaaaa 43210129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 249
Target Start/End: Original strand, 50336186 - 50336331
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||| | |||||| | |||| ||||||||||   |||||||||||||| ||| ||||||||||  ||||| |||| ||||||||||    
T  50336186 agatgagttttgatgatacaatacctgatatttggtgcttgatgagcatagaaacttgcttcatgacgatttgcaatggtttgggatgaggattttgacc 50336285  T
Q  204 caaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  50336286 caaaaaatcgcactttttgggtttttgaaggtggagggaaagaaaa 50336331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 41419035 - 41418911
Alignment:
Q  125 tacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttggg 224  Q
    |||||| | |||| ||||||||||  |||||||||||| |||| | |||||| ||| |||||| |||| |||||||||||||||| ||||||||||||||    
T  41419035 tacctgatatttggtgcttgatgagcgtagaaacttgcgtcctaacgatttgtaatgatttgggatgaggattttgacccaaaaaatcgcactttttggg 41418936  T
Q  225 tttttggaggtggagggaaagaaaa 249  Q
    |||||| ||||||||||||||||||    
T  41418935 tttttgaaggtggagggaaagaaaa 41418911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 1938695 - 1938580
Alignment:
Q  134 tttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggag 233  Q
    |||| ||||||||||   ||||||||| ||| |||| |||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||| ||    
T  1938695 tttggtgcttgatgagcatagaaactttctttctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaag 1938596  T
Q  234 gtggagggaaagaaaa 249  Q
    ||||||||||||||||    
T  1938595 gtggagggaaagaaaa 1938580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 33990877 - 33990762
Alignment:
Q  134 tttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggag 233  Q
    |||| ||||||||||  ||||||||||| ||| ||| |||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||| ||    
T  33990877 tttggtgcttgatgagcgtagaaacttgattcatgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaag 33990778  T
Q  234 gtggagggaaagaaaa 249  Q
    ||||| ||||||||||    
T  33990777 gtggaaggaaagaaaa 33990762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 249
Target Start/End: Complemental strand, 12656667 - 12656515
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||||| |||||| | |||| ||||||||||  |||||||||||||| |||| |||||||||| |||||| || | ||||||||||    
T  12656667 agatgagttttgatgatataatacctgatatttggtgcttgatgagcgtagaaacttgctttctgacgatttgcaatgatttgggataaggattttgacc 12656568  T
Q  204 caaaaa-------ttcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    ||||||       ||||||||||||||||||||| ||||||||||||||||||    
T  12656567 caaaaaatcgcacttcgcactttttgggtttttgaaggtggagggaaagaaaa 12656515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 6599384 - 6599469
Alignment:
Q  152 tagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttt-tgggtttttggaggtg 236  Q
    ||||||| |||||||||| || ||||||| ||||| |||||||||||| ||| ||||||||||| ||||  |||||||||||||||    
T  6599384 tagaaacctgcttcctgacgacttgcaatgatttgaaatgaagatttttaccaaaaaattcgcatttttgggggtttttggaggtg 6599469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 12586623 - 12586589
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||||||||||||||    
T  12586623 tacaactagcgtgagttaactcacgctgagcccta 12586589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 45246666 - 45246700
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||||||||||||||    
T  45246666 tacaactagcgtgagttaactcacgctgagcccta 45246700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 5534180 - 5534215
Alignment:
Q  214 cactttttgggtttttggaggtggagggaaagaaaa 249  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5534180 cactttttgggtttttgaaggtggagggaaagaaaa 5534215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 29348950 - 29348911
Alignment:
Q  211 tcgcactttttgggtttttggaggtggagggaaagaaaaa 250  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  29348950 tcgcaatttctgggtttttggaggtggagggaaagaaaaa 29348911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 55524161 - 55524127
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||| ||||||||||||||||||||||||||||||    
T  55524161 tacacctagcgtgagttaactcacgctgagcccta 55524127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 36499336 - 36499308
Alignment:
Q  26 tagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||||||||    
T  36499336 tagcgtgagttaactcacgctgagcccta 36499308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 123 - 267
Target Start/End: Complemental strand, 38739679 - 38739536
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||||||||||||||||||||||  |||||| |||| ||||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||    
T  38739679 attacctgttctttgatgcttgatgagcgtagaa-cttgtttcctgacgatttgcaatgatttagaatgaagattttgacccaaaaattctcactttttg 38739581  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttg 267  Q
    |||||||||||||||||||||||||||||||||| | ||||||||    
T  38739580 ggtttttggaggtggagggaaagaaaaaatggagctttgtggttg 38739536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 30491528 - 30491679
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttt-t 221  Q
    ||||||||||||||||||||||||||  |||||||||||  |||||| |||||||||| ||||||||||||||||||||| ||||| |||||||||||      
T  30491528 attacctgttctttgatgcttgatgagcgtagaaacttgtctcctgacgatttgcaatgatttggaatgaagattttgactcaaaatttcgcacttttgg 30491627  T
Q  222 gggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  30491628 gggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctgct 30491679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 763118 - 763267
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||| ||||||||||||||||||  ||||||| ||| ||||| | |||||||||| |||||||||||||||||| | |||||| ||||||| |||||    
T  763118 attacctattctttgatgcttgatgagcgtagaaatttgtttcctaacgatttgcaatgatttggaatgaagatttttatccaaaatttcgcac-ttttg 763216  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    |  ||||| ||||||||||||||||||||||||| | ||||||||||||||    
T  763217 gaattttgaaggtggagggaaagaaaaaatggagctttgtggttgcctgct 763267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 109 - 255
Target Start/End: Original strand, 34017398 - 34017544
Alignment:
Q  109 agttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaa 208  Q
    ||||||||  ||| ||||| ||||||||||||||||||||  ||||||||||| ||||||| |||||||||| ||||| |||||||||||| ||||||||    
T  34017398 agttttgacgatacattacatgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttgaaatgaagatttttacccaaaa 34017497  T
Q  209 attcgcactttttgggtttttggaggtggagggaaagaaaaaatgga 255  Q
     || |||||||| |  ||||||||||||||| |||||||||||||||    
T  34017498 ttttgcacttttggaatttttggaggtggagtgaaagaaaaaatgga 34017544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 249
Target Start/End: Complemental strand, 32910730 - 32910585
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||| | |||||| | |||| |||||||||| |||||||||||||||| ||| ||||||||||  ||||| ||||  |||||||||    
T  32910730 agatgagttttgatgatacaatacctgatatttggtgcttgatgagtgtagaaacttgcttcatgacgatttgcaatggtttgggatgagaattttgacc 32910631  T
Q  204 caaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  32910630 caaaaattcgcactttttgggtttttgaaggtggagggaaagaaaa 32910585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 249
Target Start/End: Original strand, 29195821 - 29195966
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||||| |||||| | |||| ||||||||||  |||||||||||||| |||| |||||||||| |||||| |||| ||| ||||||    
T  29195821 agatgagttttgatgatataatacctgatatttggtgcttgatgagcgtagaaacttgctttctgacgatttgcaatgatttgggatgaggatattgacc 29195920  T
Q  204 caaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
     ||||| | |||||||||||||||||| ||||||||||||||||||    
T  29195921 taaaaaattgcactttttgggtttttgaaggtggagggaaagaaaa 29195966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 33143948 - 33144068
Alignment:
Q  154 gaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggagggaaag-aaaaaat 252  Q
    |||||||| || |||| |||||||||| |||||||||||||||||| |||||||| |||||| |||| ||| |||||||||||||||||||| |||||||    
T  33143948 gaaacttgttttctgacgatttgcaatgatttggaatgaagattttcacccaaaatttcgcatttttgggggttttggaggtggagggaaagaaaaaaat 33144047  T
Q  253 ggagttgtgtggttgcctgct 273  Q
    |||||| |||||||| |||||    
T  33144048 ggagttttgtggttgtctgct 33144068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 16109403 - 16109318
Alignment:
Q  164 tcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggagggaaagaaaaa 250  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16109403 tcctgacgattt-caataatttggaatgaagattttgacccaaaaaatcgcactttttgggtttttggaggtggagggaaagaaaaa 16109318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 15235063 - 15235165
Alignment:
Q  134 tttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgaccc-aaaaattcgcactttttgggtttttgga 232  Q
    ||||||||||||||| ||||  ||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  15235063 tttgatgcttgatgagtgtatgaacttgctttctgacgatttgcaatgatttggaatgaagattttgacccaaaaaaattgcactttttgggtttttgga 15235162  T
Q  233 ggt 235  Q
    |||    
T  15235163 ggt 15235165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 20887682 - 20887806
Alignment:
Q  125 tacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttggg 224  Q
    |||||| | |||| |||||||| |  |||||||||| |||||||| |||||||||| |||||| |||| ||||||||| |||||| || |||||||||||    
T  20887682 tacctgatatttggtgcttgataagcgtagaaactttcttcctgacgatttgcaatgatttgggatgaggattttgactcaaaaaatcccactttttggg 20887781  T
Q  225 tttttggaggtggagggaaagaaaa 249  Q
    |||||| ||||| ||||||||||||    
T  20887782 tttttgaaggtgtagggaaagaaaa 20887806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 8736460 - 8736550
Alignment:
Q  161 gcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtg--gagggaaagaaaa 249  Q
    |||||||||||||||||||| ||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||  |||||||||||||    
T  8736460 gcttcctgatgatttgcaatgatttgaaatgaagattttgattcaaaaatttgcactttttgggtttttggaggtggagagggaaagaaaa 8736550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 123 - 267
Target Start/End: Complemental strand, 5505055 - 5504917
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||||||||||||| ||||||||  |||||||| || || |||| |||||||||| |||    ||||||||||| |||||||| || |||||||| |    
T  5505055 attacctgttctttgattcttgatgagcgtagaaacctgttttctgacgatttgcaatgatt----atgaagatttttacccaaaattttgcacttttgg 5504960  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttg 267  Q
     ||||||||||||||||||||  ||||||||||| | ||||||||    
T  5504959 agtttttggaggtggagggaa--aaaaaatggagctttgtggttg 5504917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 35050312 - 35050390
Alignment:
Q  171 gatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||||||| |||||| |||| |||||||||||||||| ||| |||||||   |||||| ||||||||||||||||||    
T  35050312 gatttgcaatgatttgggatgaggattttgacccaaaaaatcgtactttttttatttttgaaggtggagggaaagaaaa 35050390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 5505156 - 5505122
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||||||||||||||    
T  5505156 tacaactagcgtgagttaactcacgctgagcccta 5505122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 34017320 - 34017354
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||||||||||||||    
T  34017320 tacaactagcgtgagttaactcacgctgagcccta 34017354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 30491427 - 30491459
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagccc 52  Q
    ||||||||||||||||||||||||| |||||||    
T  30491427 tacaactagcgtgagttaactcacgttgagccc 30491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 7666702 - 7666852
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaa-ttcgcacttttt 221  Q
    ||||| ||||||||||||||||||||  ||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  7666702 attacatgttctttgatgcttgatgagcgtagaaacttatttcctgatgatttgcaatgatttggaatgaagatttt-acccaaaaatttcgcacttttt 7666800  T
Q  222 gggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||||||||    
T  7666801 gggtttttggaggtggagggaaagaaaaaatggagcttagtggttgcctgct 7666852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 109 - 273
Target Start/End: Complemental strand, 19867091 - 19866927
Alignment:
Q  109 agttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaa 208  Q
    ||||||||  ||| ||||||||||||||||||||||||||  ||||||||||| |||||||  |||| |||| |||||||||||||||||| ||||||||    
T  19867091 agttttgacgatacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacaatttacaatgatttggaatgaagattttcacccaaaa 19866992  T
Q  209 attcgcactttttg-ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
     ||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  19866991 tttcgcacttttggaggtttttggaggtggagggaaagaaaaaatggagct-tgtggttgcctgct 19866927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 123 - 273
Target Start/End: Complemental strand, 35995430 - 35995280
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||| ||||||||| || | ||| |||||||||||| ||||||| |    
T  35995430 attacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaataaaaaattttacccaaaaattcacacttttgg 35995331  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    |||||||||||||||||||||||||||||||||| | | || |||||||||    
T  35995330 ggtttttggaggtggagggaaagaaaaaatggagctttatgattgcctgct 35995280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 104 - 249
Target Start/End: Complemental strand, 54335799 - 54335654
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||||| |||||| | |||| ||||||||||  ||||||||||||||||||| |||||||||| |||||| |||| ||||||||||    
T  54335799 agatgagttttgatgatataatacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacc 54335700  T
Q  204 caaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||    
T  54335699 caaaaatttgcactttttgggtttttgaaggtggagggaaagaaaa 54335654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 109 - 273
Target Start/End: Complemental strand, 35063273 - 35063110
Alignment:
Q  109 agttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaa 208  Q
    |||||||| |||| ||||||| ||||||||| ||||||||  ||||||||||| ||| ||| |||||||||| ||||||| | |||||||| ||||||||    
T  35063273 agttttgacaatacattacctattctttgatacttgatgagcgtagaaacttgtttc-tgacgatttgcaatgatttggattaaagatttttacccaaaa 35063175  T
Q  209 attcgcactttttgggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
     ||||||||||| || |||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  35063174 tttcgcacttttgggatttttggaggtggagggaaagaaaaaatagagctttgtggttgcctgct 35063110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 30528612 - 30528497
Alignment:
Q  134 tttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggag 233  Q
    ||||||| ||||||| | |||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  30528612 tttgatgtttgatgagtatagaaacttgcttcctgacgatttgcaatgatttagaatgaagattttgatccaaaaaatcgcactttttgggtttttggag 30528513  T
Q  234 gtggagggaaagaaaa 249  Q
    ||||||||||||||||    
T  30528512 gtggagggaaagaaaa 30528497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 150 - 267
Target Start/End: Original strand, 34086601 - 34086718
Alignment:
Q  150 tgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||||||||  ||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  34086601 tgtagaaacttatttcctgacgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagaaaa 34086700  T
Q  250 aatggagttgtgtggttg 267  Q
    ||||||| | ||||||||    
T  34086701 aatggagctttgtggttg 34086718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 249
Target Start/End: Original strand, 30933789 - 30933934
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||| | |||||| | |||| ||||||||||  ||||||||||||||||||| |||||||||| |||||| |||| ||||||||||    
T  30933789 agatgagttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacc 30933888  T
Q  204 caaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||    
T  30933889 caaaaaattgcactttttgggtttttgaaggtggagggaaagaaaa 30933934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 14443735 - 14443859
Alignment:
Q  125 tacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttggg 224  Q
    |||||| || ||| ||||||||||  |||||||||| |||||||| |||||||||| |||||| |||| |||||||||| ||||| ||||||||||||||    
T  14443735 tacctgatcattggtgcttgatgagcgtagaaacttacttcctgacgatttgcaatgatttgggatgaggattttgaccgaaaaaatcgcactttttggg 14443834  T
Q  225 tttttggaggtggagggaaagaaaa 249  Q
    |||||||||||||||||||||||||    
T  14443835 tttttggaggtggagggaaagaaaa 14443859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 11917040 - 11916930
Alignment:
Q  139 tgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtgga 238  Q
    ||||||||||  ||||||||||||||||||| |||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  11917040 tgcttgatgagcgtagaaacttgcttcctgacgatttgcaaagatttgggatgaggattttgacccaaaaattcgcactttttgggtttttgaaggtgga 11916941  T
Q  239 gggaaagaaaa 249  Q
    |||||| ||||    
T  11916940 gggaaaaaaaa 11916930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 104 - 249
Target Start/End: Original strand, 20518043 - 20518188
Alignment:
Q  104 agattagttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacc 203  Q
    |||| ||||||||  ||| | |||||| | |||| ||||||||||  ||||||||||||||| ||| ||||| ||||  ||||| |||| ||||||||||    
T  20518043 agatgagttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcatgacgatttacaatgctttgggatgaggattttgacc 20518142  T
Q  204 caaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  20518143 caaaaattcgcactttttgggtttttgaaggtggagggaaagaaaa 20518188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 53767339 - 53767224
Alignment:
Q  134 tttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggag 233  Q
    |||| ||||||||||  ||||||||||||||| ||| |||||||||| |||||| ||||  ||||||||||||||| |  ||||||||||||||||| ||    
T  53767339 tttggtgcttgatgagcgtagaaacttgcttcatgacgatttgcaatgatttgggatgagaattttgacccaaaaaattacactttttgggtttttgaag 53767240  T
Q  234 gtggagggaaagaaaa 249  Q
    ||||||||||||||||    
T  53767239 gtggagggaaagaaaa 53767224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 39649718 - 39649825
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||| ||||||||||||||||||  ||||||| ||| ||||||| |||||||||| |||||||||||||||||| |||||||| || |||||||| |    
T  39649718 attacctattctttgatgcttgatgagcgtagaaatttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaattttgcacttttgg 39649817  T
Q  223 ggtttttg 230  Q
     |||||||    
T  39649818 agtttttg 39649825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 7666601 - 7666635
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||||||||||||||    
T  7666601 tacaactagcgtgagttaactcacgctgagcccta 7666635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 34086471 - 34086505
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||||||||||||||    
T  34086471 tacaactagcgtgagttaactcacgctgagcccta 34086505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 35063360 - 35063326
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||||||||||||||    
T  35063360 tacaactagcgtgagttaactcacgctgagcccta 35063326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 35995522 - 35995488
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    ||||||||||||||||||||||||||||| |||||    
T  35995522 tacaactagcgtgagttaactcacgctgaacccta 35995488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 39649618 - 39649652
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||| ||||||||||    
T  39649618 tacaactagcgtgagttaactcacactgagcccta 39649652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 31522358 - 31522508
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||||||||||||||||||||||||   |||||||||| ||||||| |||||||||| ||||||||| |||||||| |||||||| ||||||||||| |    
T  31522358 attacctgttctttgatgcttgatgagcatagaaacttgtttcctgacgatttgcaatgatttggaattaagatttttacccaaaatttcgcacttttgg 31522457  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  31522458 ggtttttggaggtggagggaaagaaaaaatggagctatgtggttgcttgct 31522508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 32275556 - 32275706
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||| ||||||||||||||||||||  ||||||| ||| ||||||| |||||||||  |||||||||||||||||| |||||||| ||||||||||| |    
T  32275556 attacatgttctttgatgcttgatgagcgtagaaatttgtttcctgacgatttgcaaagatttggaatgaagatttttacccaaaatttcgcacttttgg 32275655  T
Q  223 ggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  32275656 ggtttttggaggtggaggaaaagaaaaaatggagctttgtggttgcctgct 32275706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 13543678 - 13543792
Alignment:
Q  134 tttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggag 233  Q
    |||||||||||||||  |||||| ||||||||||   |||||||||| ||||||||| |||||||||||| ||||||| |||| ||||||||||||||||    
T  13543678 tttgatgcttgatgagcgtagaagcttgcttcctaccgatttgcaatgatttggaataaagattttgaccaaaaaatt-gcaccttttgggtttttggag 13543776  T
Q  234 gtggagggaaagaaaa 249  Q
    ||||||||||||||||    
T  13543777 gtggagggaaagaaaa 13543792  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 8518615 - 8518521
Alignment:
Q  142 ttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtg 236  Q
    |||||||| ||||||||||||||||  | ||||  |||| ||||| ||||| |||||||||  ||||||| ||||||||||||||||| ||||||    
T  8518615 ttgatgaacgtagaaacttgcttcccaacgattaacaatgatttgaaatgatgattttgacataaaaatttgcactttttgggtttttagaggtg 8518521  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 7452411 - 7452484
Alignment:
Q  177 caattatttggaatgaagattttgacccaaaaat-tcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||| |||||||||||||||||| |   |||||  ||| ||||||| |||||||||||||||||||||||||||    
T  7452411 caataatttggaatgaagattttaataaaaaaaaatcggacttttttggtttttggaggtggagggaaagaaaa 7452484  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 4321443 - 4321477
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    ||||||||||| |||||||||||||||||||||||    
T  4321443 tacaactagcgggagttaactcacgctgagcccta 4321477  T

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Target: scaffold0037 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 129 - 268
Target Start/End: Original strand, 38128 - 38266
Alignment:
Q  129 tgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttt 228  Q
    ||||||||||||||||||||  ||||||||||| ||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  38128 tgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaaatttgcactttttggctttt 38227  T
Q  229 tggaggtggagggaaagaaaaaatggagttgtgtggttgc 268  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  38228 tggaggtggagggaaag-aaaaatggagctgtgtggttgc 38266  T

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Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 2807075 - 2807296
Alignment:
Q  28 gcgtgagttaactcacgctgagccctatcacctagttcaaaaaactgacgaaccttgcagaaaaatcaggtaaaacagattagttttgagaatatattac 127  Q
    ||||||||||||||||||| |||||||||| |||  |||||||| |||||||||  |||||||||  ||  ||||| ||| ||||||||  ||| |||||    
T  2807075 gcgtgagttaactcacgctaagccctatcatctacctcaaaaaaatgacgaaccaggcagaaaaactagcaaaaacggatgagttttgatgatacattac 2807174  T
Q  128 ctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggttt 227  Q
    ||||||||||||| |||| ||  |||  |||||||||||| | |||||||||| ||||  |||||||||||||||||||||| | | |||||||||| ||    
T  2807175 ctgttctttgatgtttgacgagcgtaagaacttgcttcctaacgatttgcaatgatttcaaatgaagattttgacccaaaaaattgtactttttggg-tt 2807273  T
Q  228 ttggaggtggagggaaagaaaaa 250  Q
    || ||||||||||||||||||||    
T  2807274 ttagaggtggagggaaagaaaaa 2807296  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 24626061 - 24626172
Alignment:
Q  138 atgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtgg 237  Q
    |||||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| | |||||||||| |||||||||||||     
T  24626061 atgcttgatgagcgtagaaacttgcttcatgatgatttgcaatgatttggaatgaagatttttacccaaaaaattgcactttttgtgtttttggaggtgc 24626160  T
Q  238 agggaaagaaaa 249  Q
    ||||||||||||    
T  24626161 agggaaagaaaa 24626172  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 126 - 273
Target Start/End: Complemental strand, 34276532 - 34276386
Alignment:
Q  126 acctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggt 225  Q
    ||||||||||||||| ||||||   ||||||||||| ||| ||| |||||||||| |||||||||||||||||| |||||||| ||| | ||||| ||||    
T  34276532 acctgttctttgatggttgatgggcgtagaaacttgtttcatgacgatttgcaatgatttggaatgaagatttttacccaaaatttctctcttttggggt 34276433  T
Q  226 ttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||    
T  34276432 ttttggaggtggaggggaa-aaaaaattgagctttgtggttgcctgct 34276386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 13868202 - 13868319
Alignment:
Q  134 tttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggag 233  Q
    ||||||||||||||| ||||||||||| |||||  | |||||||||| ||||| |||||||| ||||||||||||||| |||||||||| ||||||||||    
T  13868202 tttgatgcttgatgagtgtagaaacttacttccccacgatttgcaatgatttgaaatgaagaatttgacccaaaaatttgcactttttgagtttttggag 13868301  T
Q  234 gtg--gagggaaagaaaa 249  Q
    |||  |||||||||||||    
T  13868302 gtggagagggaaagaaaa 13868319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 32075151 - 32075052
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    |||||||| | |||||||||||||||  ||||||||||||||||||||||||| |||| |||||| |||| ||||||||||||||||||| |||||||||    
T  32075151 attacctgatatttgatgcttgatgagcgtagaaacttgcttcctgatgatttacaatgatttgggatgaggattttgacccaaaaattcacactttttg 32075052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 14189912 - 14189780
Alignment:
Q  119 atatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactt 218  Q
    |||||||||||| | ||| |||||||||||  |||| ||||| |||||| | |||||||||| ||||| |||||||||||||||||||||| || |||||    
T  14189912 atatattacctgattttttatgcttgatgagcgtagtaactttcttcctaacgatttgcaatgatttgaaatgaagattttgacccaaaaaatcacactt 14189813  T
Q  219 tttgggtttttggaggt--ggagggaaagaaaa 249  Q
    |||| | ||||||||||  ||||||||||||||    
T  14189812 tttgagattttggaggtagggagggaaagaaaa 14189780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 33228376 - 33228311
Alignment:
Q  208 aattcgcactttttgggtttttggaggtggagggaaagaaaaaatggagttgtgtggttgcctgct 273  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  33228376 aattcgcactttttgggtttttggaggtggaggaaaagaaaaaatggagctttgtggttgcctgct 33228311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 41601187 - 41601120
Alignment:
Q  182 atttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  41601187 atttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaaggtggagggaaagaaaa 41601120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 20534367 - 20534421
Alignment:
Q  195 attttgacccaaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  20534367 attttgacccaaaatttcgcactttttgggtttttgaaggtggagggaaagaaaa 20534421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 27188222 - 27188318
Alignment:
Q  154 gaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtg--gagggaaagaaa 248  Q
    |||| ||||||||||| |||| ||||| ||||| |||||||||||| ||||||||| | ||| ||||| | ||||||||| ||  ||||||||||||    
T  27188222 gaaatttgcttcctgacgattagcaatgatttgaaatgaagattttaacccaaaaaattgcattttttagctttttggagttgaagagggaaagaaa 27188318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 20532104 - 20532180
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagatttt 199  Q
    |||||||| | |||||||||||||||  ||||||||||||||||  |  ||||||||| |||||||||||| |||||    
T  20532104 attacctggtatttgatgcttgatgagcgtagaaacttgcttccatacaatttgcaatgatttggaatgaaaatttt 20532180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 34276636 - 34276602
Alignment:
Q  20 tacaactagcgtgagttaactcacgctgagcccta 54  Q
    |||||||||||||||||||||||||||||||||||    
T  34276636 tacaactagcgtgagttaactcacgctgagcccta 34276602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 22661935 - 22661899
Alignment:
Q  213 gcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  22661935 gcactttttgcgtttttgaaggtggagggaaagaaaa 22661899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 1769 - 1620
Alignment:
Q  123 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 222  Q
    ||||| ||||||| ||||||||||||  ||||||||||| ||||||| |||||||||| ||||||||| ||||||||  ||||||||||||||||||| |    
T  1769 attacatgttcttcgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaataaagatttttgcccaaaaattcgcacttttgg 1670  T
Q  223 ggtttttggaggtggagggaaagaa-aaaatggagttgtgtggttgcctg 271  Q
    ||||||||||||||||||||||||| ||||||||| | | ||||||||||    
T  1669 ggtttttggaggtggagggaaagaaaaaaatggagctttatggttgcctg 1620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 8791 - 8681
Alignment:
Q  139 tgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtgga 238  Q
    ||||||||||  ||||||||||||||||||| |||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  8791 tgcttgatgagcgtagaaacttgcttcctgacgatttgcaaagatttgggatgaggattttgacccaaaaattcgcactttttgggtttttgaaggtgga 8692  T
Q  239 gggaaagaaaa 249  Q
    |||||| ||||    
T  8691 gggaaaaaaaa 8681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 249
Target Start/End: Complemental strand, 2159 - 2061
Alignment:
Q  151 gtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggtttttggaggtggagggaaagaaaa 249  Q
    ||||||||||||||||||| |||||||||| ||||   ||||  ||||| ||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  2159 gtagaaacttgcttcctgacgatttgcaatgatttaagatgagcatttttacccaaaaaatcgcactttttgggtttttaaaggtggagggaaagaaaa 2061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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