View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21486_low_7 (Length: 422)
Name: NF21486_low_7
Description: NF21486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21486_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 106 - 422
Target Start/End: Original strand, 19398726 - 19399042
Alignment:
| Q |
106 |
atatggagatgatattcaggttgtgatccctactacatacaaatctttgtataatcagattctaaatgagaataacacttgcacattaagcgactatcaa |
205 |
Q |
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| T |
19398726 |
atatggagatgatattcaggttgtgatccctactacatacaaagctttgtatgatcagattctaaatgagaataacacttgcacattgaacgactatcaa |
19398825 |
T |
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| Q |
206 |
attggtgctaatgatttgttatttaaagcatatgatcataagtaccgtttgaaatggaccagtgggacaacatccattaatgttaatgttcatgatatcc |
305 |
Q |
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| T |
19398826 |
attggtgctaatgatttgttatttaaagcatatgatcataagtaccgtttgaaatggactagtgggacaacatccattaatgttaatgttcatgatatcc |
19398925 |
T |
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| Q |
306 |
tcaatactctattgaaattcaaacctttttctgaaattatatatgaaaaatggagagttgatctcttagttcgtgagtattttatgatttcttttgatta |
405 |
Q |
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| T |
19398926 |
tcaatcctctcttgaaattcaaacctttttctgaaattatatatgaaaaatggagagttgatctcttagttcgtgagtattctatgctttcttttgatta |
19399025 |
T |
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| Q |
406 |
caattttattagcatgt |
422 |
Q |
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| T |
19399026 |
taattttattagcatgt |
19399042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 277
Target Start/End: Complemental strand, 20220792 - 20220628
Alignment:
| Q |
113 |
gatgatattcaggttgtgatccctactacatacaaatctttgtataatcagattctaaatgagaataacacttgcacattaagcgactatcaaattggtg |
212 |
Q |
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| T |
20220792 |
gatgatattcatgttgtgatccctactgaatacaaagctatgtatgatctaatactgaaagagaacaacacctacacattgagcaactttcaagttggta |
20220693 |
T |
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| Q |
213 |
ctaatgatttgttatttaaagcatatgatcataagtaccgtttgaaatggaccagtgggacaaca |
277 |
Q |
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| T |
20220692 |
ccaatgatttgctcttcaaagcatcttatcataagtaccgtttgaaatggactggcgggacaaca |
20220628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 20994202 - 20994264
Alignment:
| Q |
215 |
aatgatttgttatttaaagcatatgatcataagtaccgtttgaaatggaccagtgggacaaca |
277 |
Q |
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| T |
20994202 |
aatgatttgctcttcaaagcctctgatcataagtaccgtttgaaatggactggtggcacaaca |
20994264 |
T |
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