View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21486_low_8 (Length: 410)
Name: NF21486_low_8
Description: NF21486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21486_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 30942490 - 30942868
Alignment:
| Q |
19 |
gaaccaaataaaatggtcaagactacaacaaatgaaacatattgtgcaatttcctcacgtttgtgcttaaatttaggatatgatcttggcatggtttcct |
118 |
Q |
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| T |
30942490 |
gaaccaaataaaatggtcaagactacaacaaatgaaacatattgtgcaatttcctcacgtttgtgcttaaatttaggatatgatcttggcatggtttcct |
30942589 |
T |
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| Q |
119 |
tgtacttatatggataattactactagtggagttgtgttgcaattgtgaagttatttttcgatccttggctaatggttgtttaaatttgaagtcaagaaa |
218 |
Q |
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| T |
30942590 |
tgtacttatatggataattactactagtggagttgtgttgcaattgtgaagttatttttccatccttggctaatggttgtttaaatttgaagtcaagaaa |
30942689 |
T |
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| Q |
219 |
gggttcattgttatgtagagacatcttcttgttccatgtaatgctgtttatttgcccctctttattaacgcaaatatggaacttcaaatggtatgttgta |
318 |
Q |
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| T |
30942690 |
gggttcattgttatgtagagacatcttcttgttccatgtaatgctgtttatttgcccctctttattaacgcaaatatggaacttcaaatggtatgttgta |
30942789 |
T |
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| Q |
319 |
ggacactctacaaagagaacattctgcggtgtatagaaagttagaaggaggattagaaaactcatacaaagaaaaaagt |
397 |
Q |
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| T |
30942790 |
ggacactctacaaagagaacattctgcggtgtatagaaagttagaaggaggattagaaaactcatacaaagaaataagt |
30942868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 30957842 - 30957933
Alignment:
| Q |
30 |
aatggtcaagactacaacaaatgaaacatattgtgcaatttcctcacgtttgtgcttaaatttaggatatgatcttggcatggtttccttgt |
121 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||| |||||| |||| |||| ||||||||||| | || ||||||||||||| |
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| T |
30957842 |
aatgctcaagactacaacaaatgaaacatgttgtgcaatttccttacgtttctgctgaaatataggatatgatttaggaatggtttccttgt |
30957933 |
T |
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