View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21487_high_1 (Length: 595)
Name: NF21487_high_1
Description: NF21487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21487_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 40908952 - 40908555
Alignment:
| Q |
10 |
aatatgcattgagtgtgtataatgatgctgtaaaattggtacacatggttaaggattcaaaattgagtttgattcctgttgaagtctattgcagtggagg |
109 |
Q |
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| T |
40908952 |
aatatgcattgagtgtgtataatgatgctgtaaaattgatacacatggttaaggattcaaaattgagtttgattcctgttaaagcctattgcaatgcaga |
40908853 |
T |
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| Q |
110 |
gatgttatgctaaaaatacttgatagtatatacaaatactacgcccaagtcccttgagccctattgagagtggtagcatgttgttagccataggaaagat |
209 |
Q |
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| T |
40908852 |
gaaattatgctcaaaatacttgatagaatatccaaatattacgaccaagtcccccgagccctattgagtgtggtcgcatgctgttagccataggaaagat |
40908753 |
T |
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| Q |
210 |
ctagctagacagaattcatcatgaatcatttgtagtttgttagagtgtgctaaataaactaatttatgttatgtttggcctggcataagcatgagccatc |
309 |
Q |
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| T |
40908752 |
ctatcaagacagaattcatcatgaatcatttgtagtttgttagtgtgcgctaaataaactaatttatgttatgtttagcctggcctaagcatgagccatc |
40908653 |
T |
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| Q |
310 |
ttctttcttttgctacttcttcataattttgtaaatttcttacagtttggctctatatttcaatctgctgttgtttgatattacattacaacctttatt |
408 |
Q |
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| T |
40908652 |
ttctttcttttgctgctt-ttcataattttgtaaatttcttacaattaggctctatatttcaacctgcagttgtttgatattacattacaacctttatt |
40908555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 477 - 580
Target Start/End: Complemental strand, 40905796 - 40905693
Alignment:
| Q |
477 |
gtattgccattttcctacaatatatggaaatcacttgaaataccacaacaacaaaatcaaaatctatcttatcttttattaaacaatcccaacagcataa |
576 |
Q |
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| T |
40905796 |
gtatagcccttttccttcaatatatggaaatcacttgaaataccaaaacaacaaaatcaaaatctagcttatcttttattagacaatcccagtagcataa |
40905697 |
T |
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| Q |
577 |
ttct |
580 |
Q |
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|||| |
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| T |
40905696 |
ttct |
40905693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 527 - 580
Target Start/End: Complemental strand, 40901188 - 40901135
Alignment:
| Q |
527 |
acaaaatcaaaatctatcttatcttttattaaacaatcccaacagcataattct |
580 |
Q |
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| T |
40901188 |
acaaaatcaaaatctagcttatcttgtattagagaatcccaacagcacaattct |
40901135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 40901364 - 40901324
Alignment:
| Q |
331 |
cataattttgtaaatttcttacagtttggctctatatttca |
371 |
Q |
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| T |
40901364 |
cataattttgtaaactccttacagtttggctctagatttca |
40901324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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