View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21487_low_3 (Length: 217)
Name: NF21487_low_3
Description: NF21487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21487_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 28179109 - 28178927
Alignment:
| Q |
6 |
tgtcgaataaaatcataactgattttgcgaatgttgtgtcctttcgattaaagtacatatataatataacaagagacaaaataaaccaaagaaagtgagt |
105 |
Q |
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| T |
28179109 |
tgtcgaataaaatcataactgattttgcgaatgttgtgtcctttcgattaatgtacatatataatataacaagagacaaaataaaccaaagaaagtgagt |
28179010 |
T |
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| Q |
106 |
tattagacaatcaatatcataattgaaccattaatctttttggtacagattgattctccttttcactatacatacatatataa |
188 |
Q |
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| T |
28179009 |
tattagacaatcaatatcagaattgaaccattaatccttttggtacagattgattctccttttcactatacatacatacataa |
28178927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 28160424 - 28160364
Alignment:
| Q |
93 |
aaagaaagtgagttattagacaatcaatatcataattgaaccattaatctttttggtacag |
153 |
Q |
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| T |
28160424 |
aaaggaagtgagttattagacaatcaatatcctaattgaaccattaagctttttggtacag |
28160364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 28174193 - 28174125
Alignment:
| Q |
64 |
atataatataacaagagacaaaataaaccaaagaaagtgagttattagacaatcaatatcataattgaac |
133 |
Q |
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| T |
28174193 |
atataatataacaggagacaaaa-agaccaaagaaagtatgttattagacaaccaatatcccaattgaac |
28174125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 28177228 - 28177153
Alignment:
| Q |
64 |
atataatataacaagagacaaaataaaccaa--agaaagtgagttattagacaatcaatatcataattgaaccatt |
137 |
Q |
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| T |
28177228 |
atataatataacaggagacaaaaagagcaaagaagaaagtgtgttattagacaaccaatatcctaattgaaccatt |
28177153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 28169078 - 28169050
Alignment:
| Q |
155 |
ttgattctccttttcactatacatacata |
183 |
Q |
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| T |
28169078 |
ttgattctccttttcactatacatacata |
28169050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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