View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21488_high_4 (Length: 310)

Name: NF21488_high_4
Description: NF21488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21488_high_4
NF21488_high_4
[»] chr7 (4 HSPs)
chr7 (108-264)||(32538842-32538993)
chr7 (44-110)||(32538061-32538127)
chr7 (43-110)||(37633092-37633159)
chr7 (36-110)||(44959249-44959323)
[»] chr3 (3 HSPs)
chr3 (36-110)||(45222401-45222475)
chr3 (36-106)||(52498928-52498998)
chr3 (43-106)||(53592296-53592359)
[»] chr5 (7 HSPs)
chr5 (36-110)||(14633817-14633891)
chr5 (36-106)||(10540102-10540172)
chr5 (36-110)||(34696345-34696419)
chr5 (36-110)||(40484342-40484415)
chr5 (36-107)||(23928401-23928472)
chr5 (36-106)||(26362683-26362753)
chr5 (38-110)||(6011193-6011265)
[»] chr8 (3 HSPs)
chr8 (36-109)||(27822609-27822682)
chr8 (36-107)||(31628139-31628210)
chr8 (44-110)||(37780913-37780979)
[»] chr2 (3 HSPs)
chr2 (43-110)||(27451696-27451763)
chr2 (38-101)||(17473697-17473760)
chr2 (36-110)||(8423852-8423926)
[»] chr1 (6 HSPs)
chr1 (36-110)||(14293967-14294041)
chr1 (43-110)||(38036500-38036567)
chr1 (68-110)||(220570-220612)
chr1 (43-107)||(21969326-21969390)
chr1 (36-107)||(40710149-40710220)
chr1 (36-110)||(39331182-39331256)
[»] scaffold0017 (1 HSPs)
scaffold0017 (43-110)||(28735-28802)
[»] scaffold0123 (1 HSPs)
scaffold0123 (36-104)||(26459-26527)
[»] chr4 (3 HSPs)
chr4 (38-110)||(26688381-26688453)
chr4 (38-106)||(43343042-43343110)
chr4 (82-110)||(890969-890997)
[»] scaffold0001 (1 HSPs)
scaffold0001 (36-107)||(396914-396985)
[»] chr6 (4 HSPs)
chr6 (36-107)||(30125787-30125858)
chr6 (36-106)||(8770004-8770074)
chr6 (38-111)||(17437190-17437263)
chr6 (52-109)||(31834559-31834616)
[»] scaffold0688 (2 HSPs)
scaffold0688 (38-110)||(2748-2820)
scaffold0688 (38-110)||(4415-4487)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 108 - 264
Target Start/End: Original strand, 32538842 - 32538993
Alignment:
Q  108 cacattttataaatttatttttccgtatgtatatggacacaccacgaaatcaaacgacgcgcatgaaatctcacctctcgtttgttaggtgagacacaac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||    
T  32538842 cacattttataaatttatttttccgtatgtatatggacacaccacgaaatcaaacgacgcgcatgaaatctcacctctcgtttgttaggtgag-----ac 32538936  T
Q  208 acaactcaattcacgaccaattcactgtttgttcgttacacttacacgccttccatt 264  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  32538937 acaactcaattcacgaccaattgactgtttgttcgttacacttacacaccttccatt 32538993  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 32538127 - 32538061
Alignment:
Q  44 caaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    |||||| ||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  32538127 caaaccgaaaactagtggatttgtccaaactcacccattaatataatgggtggacattttacctcac 32538061  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 37633092 - 37633159
Alignment:
Q  43 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    ||||||| ||||||| ||| |||  ||||||||||||||||||||||| |||||||||| ||||||||    
T  37633092 ccaaaccgaaaactagtgggtttgtccaaactcacccattaatataataggtggacattctacctcac 37633159  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 44959323 - 44959249
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    ||||||||||||||  |||||| ||| ||| | ||||| ||||| |||||||||  ||||||| |||||||||||    
T  44959323 acccaacccaaaccggaaactattgggtttgctcaaacccaccccttaatataacaggtggacgttttacctcac 44959249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 45222475 - 45222401
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    |||||| ||||||| ||||||| ||| ||| ||||||| || |||||||||||||||||||||||||||||||||    
T  45222475 acccaaaccaaaccgaaaactagtgggttttcccaaacccatccattaatataatgggtggacattttacctcac 45222401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 52498928 - 52498998
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacc 106  Q
    ||||||||||||||  |||||| ||| ||| ||||||| |||||||||||||||| ||||||| |||||||    
T  52498928 acccaacccaaaccggaaactagtgggtttgcccaaacccacccattaatataataggtggactttttacc 52498998  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 53592359 - 53592296
Alignment:
Q  43 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacc 106  Q
    ||||||| ||||||| ||| ||| | ||||| ||||||||||||||||| |||||| |||||||    
T  53592359 ccaaaccgaaaactagtgggtttgctcaaacccacccattaatataatgagtggactttttacc 53592296  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 14633891 - 14633817
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    |||||| ||||||| |||| || ||||||| |||| || |||||||||||||||||| |||||||||||||||||    
T  14633891 acccaaaccaaaccgaaaattagtggatttgcccatacccacccattaatataatggatggacattttacctcac 14633817  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 10540172 - 10540102
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacc 106  Q
    |||||| ||||||| ||||||| ||| ||| ||||||| |||||||||||||||||| ||||| |||||||    
T  10540172 acccaaaccaaaccgaaaactagtgggtttgcccaaacccacccattaatataatggttggactttttacc 10540102  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 34696419 - 34696345
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    ||||||||||||||  |||||| ||| |||  |||||| |||| |||||||||| ||||||||||||||||||||    
T  34696419 acccaacccaaaccggaaactagtgggtttgtccaaacccacctattaatataacgggtggacattttacctcac 34696345  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 40484415 - 40484342
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    |||||| ||||||| ||||||| | | ||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  40484415 acccaaaccaaaccgaaaactagttggtttgcccaaacccacccattaat-taatgggtggacattttacctcac 40484342  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 23928401 - 23928472
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacct 107  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||||| |||||||||    
T  23928401 acccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacct 23928472  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 26362753 - 26362683
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacc 106  Q
    |||||| ||||||  ||||||| ||| |||  |||||| |||||||||||||||||| ||||| |||||||    
T  26362753 acccaaaccaaactgaaaactagtgggtttgtccaaacccacccattaatataatggatggactttttacc 26362683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 6011193 - 6011265
Alignment:
Q  38 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    ||||||||| ||||||| || | | ||| ||||||| |||||| |||||||| ||||||  ||||||||||||    
T  6011193 ccaacccaacccaaaaattagtaggtttgcccaaacccacccaataatataacgggtggttattttacctcac 6011265  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 27822682 - 27822609
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctca 109  Q
    |||||| ||||||| ||||||| ||| |||  |||||| |||||||||||||||||||||||||||||| ||||    
T  27822682 acccaaaccaaaccgaaaactagtgggtttgtccaaacccacccattaatataatgggtggacattttatctca 27822609  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 31628139 - 31628210
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacct 107  Q
    |||||||||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||||| |||||||||    
T  31628139 acccaacccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacct 31628210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 37780979 - 37780913
Alignment:
Q  44 caaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    |||||| ||||||||||| |||  |||||| ||||||||||||||| |||||  | |||||||||||    
T  37780979 caaaccgaaaactaatgggtttgtccaaacccacccattaatataacgggtgagcgttttacctcac 37780913  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 27451696 - 27451763
Alignment:
Q  43 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    ||||||| ||||||| ||  ||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  27451696 ccaaaccgaaaactagtgagttttcccaaacccacccattaatataatgggtggacgttttacctcac 27451763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 17473760 - 17473697
Alignment:
Q  38 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacatt 101  Q
    |||| ||||||| |||| || ||  ||||||||||||||||||||||||||| |||||||||||    
T  17473760 ccaaaccaaaccgaaaattagtgagtttacccaaactcacccattaatataacgggtggacatt 17473697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 8423852 - 8423926
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    |||||| ||||||| ||||||| ||| |||  ||| || |||||| |||||||| || |||||||||||||||||    
T  8423852 acccaaaccaaaccgaaaactagtgggtttgtccagacccacccagtaatataacggatggacattttacctcac 8423926  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 14293967 - 14294041
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    |||||| |||||||| |||||| ||| ||| | ||||| ||||||||||||||| |||||||| |||||||||||    
T  14293967 acccaaaccaaaccagaaactagtgggtttgctcaaacccacccattaatataacgggtggacgttttacctcac 14294041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 38036500 - 38036567
Alignment:
Q  43 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    ||||||| ||||||| ||| ||| |||||||||| ||||||||||||  ||||||| |||||||||||    
T  38036500 ccaaaccgaaaactagtgggtttgcccaaactcatccattaatataacaggtggacgttttacctcac 38036567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 220612 - 220570
Alignment:
Q  68 ccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  220612 ccaaactcacccattaatataataggtggatattttacctcac 220570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 21969326 - 21969390
Alignment:
Q  43 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacct 107  Q
    ||||||| |||| || ||||||| ||||||| ||||||||||| ||| ||||||| |||||||||    
T  21969326 ccaaaccgaaaattagtggatttgcccaaacccacccattaatttaacgggtggatattttacct 21969390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 40710149 - 40710220
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacct 107  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||||| |||||||||    
T  40710149 acccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacct 40710220  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 39331182 - 39331256
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    |||||| ||||||| ||||||| ||| |||  |||||| || |||||||||||| || ||||| |||||||||||    
T  39331182 acccaaaccaaaccgaaaactagtgggtttgtccaaacccaaccattaatataacggatggacgttttacctcac 39331256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 28735 - 28802
Alignment:
Q  43 ccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    |||||||  |||||| ||| |||  |||||| ||||||||||||||||||||| ||||||||||||||    
T  28735 ccaaaccggaaactagtgggtttgtccaaacccacccattaatataatgggtgaacattttacctcac 28802  T

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Target: scaffold0123 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 26527 - 26459
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacatttta 104  Q
    |||||| ||||||| ||||||| ||| ||| | ||||  |||||||||||||||||||||||| |||||    
T  26527 acccaaaccaaaccgaaaactagtggttttgcgcaaatccacccattaatataatgggtggacgtttta 26459  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 26688381 - 26688453
Alignment:
Q  38 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    ||||||||| ||||||| || ||||||| ||||||| |||||| || ||||| ||||||  ||||||||||||    
T  26688381 ccaacccaacccaaaaattagtggatttgcccaaacccacccaatagtataacgggtggttattttacctcac 26688453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 43343042 - 43343110
Alignment:
Q  38 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacc 106  Q
    |||| |||||||  |||||| ||| |||  |||||| |||||||||||||||||||||||| |||||||    
T  43343042 ccaaaccaaaccggaaactagtgggtttgtccaaacccacccattaatataatgggtggactttttacc 43343110  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 890969 - 890997
Alignment:
Q  82 taatataatgggtggacattttacctcac 110  Q
    |||||||||||||||||||||||||||||    
T  890969 taatataatgggtggacattttacctcac 890997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 396985 - 396914
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacct 107  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||||| |||||||||    
T  396985 acccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacct 396914  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 30125787 - 30125858
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacct 107  Q
    |||||| |||||||| ||| || ||| ||| ||||||| ||||||||||| ||| ||||||| |||||||||    
T  30125787 acccaaaccaaaccagaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacct 30125858  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 8770074 - 8770004
Alignment:
Q  36 acccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacc 106  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||||||||||| ||| ||||||| ||||||||    
T  8770074 acccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacc 8770004  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 17437190 - 17437263
Alignment:
Q  38 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcaca 111  Q
    |||||||||||| ||||||| ||  ||| ||||||| |||||||||||||||  | ||||  ||||||||||||    
T  17437190 ccaacccaaaccgaaaactagtgagtttgcccaaacccacccattaatataacagatggatgttttacctcaca 17437263  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 31834559 - 31834616
Alignment:
Q  52 aaactaatggatttacccaaactcacccattaatataatgggtggacattttacctca 109  Q
    |||||| ||| ||| |||||||||| |||||||| ||| || ||||||||||||||||    
T  31834559 aaactagtgggtttgcccaaactcatccattaatttaacggatggacattttacctca 31834616  T

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Target: scaffold0688 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 2748 - 2820
Alignment:
Q  38 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    ||||||||| ||||||| || ||| |||  |||||| |||||| |||||||| ||||||  ||||||||||||    
T  2748 ccaacccaacccaaaaattagtgggtttgtccaaacccacccaataatataacgggtggttattttacctcac 2820  T

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Target: scaffold0688; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 4415 - 4487
Alignment:
Q  38 ccaacccaaaccaaaaactaatggatttacccaaactcacccattaatataatgggtggacattttacctcac 110  Q
    ||||||||| ||||||| || ||| |||  |||||| |||||| |||||||| ||||||  ||||||||||||    
T  4415 ccaacccaacccaaaaattagtgggtttggccaaacccacccaataatataacgggtggttattttacctcac 4487  T

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