View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21488_low_1 (Length: 727)
Name: NF21488_low_1
Description: NF21488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21488_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 680; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 18 - 721
Target Start/End: Original strand, 40767444 - 40768147
Alignment:
| Q |
18 |
agcatgtatatgacagatgcttactcgagcgagagttacgagaagtatttccatgactcgaatacagaagaactgatagaaccatctagttccaacgtct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40767444 |
agcatgtatatgacagatgcttactcgagcgagagttacgagaagtatttccatgactcgaatacagaagaactgatagaaccatctagttccaacgtct |
40767543 |
T |
|
| Q |
118 |
ctacaagtttcatgccaaaaaggcaacgtggtgctgaccagtccagttttggatcagatttgataatggaaaatcgaagcatggattcaattgaagttga |
217 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40767544 |
ctacaagtttcatgccaacaaggcaacgtggtgctgatcagtccagttttggatcagatttgataatggaaaatcgaagcatggattcaattgaagttga |
40767643 |
T |
|
| Q |
218 |
tggtgtaatgagatcaaaactagaagcattggagagggcattacttgatgatagtgacattgaggaagtagaggaatatggtaattctcaaaccatggaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40767644 |
tggtgtaatgagatcaaaactagaagcattggagagggcattgcttgatgatagtgacattgaggaagaagaggaatatggtaattctcaaaccatggaa |
40767743 |
T |
|
| Q |
318 |
attgatcctaacattattgattgggctgatcctgatccaattcagaatatgctgctgttccatgaccatgactcaccaaaggagtattcgtctccagatt |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40767744 |
attgatcctaacattattgattgggctgatcctgatccaattcagaatatgctgctgttccatgaccatgactcaccaaaggagtattcgtctccagatt |
40767843 |
T |
|
| Q |
418 |
ccaatattagcagcatcagtagcaccaccaaagaaataacaaaaatttctaggacccccaagcaacttctttatgaatgtgctactgcaatttcagaagg |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40767844 |
ccaatattagcagcatcagtagcaccaccaaagaaataacaaaaatttctaggacccccaagcaacttctttatgaatgtgctactgcaatttcagaagg |
40767943 |
T |
|
| Q |
518 |
aaatgaagaggaagcatcgtcaatgataaacaatctccgacgaattgtctcaattcaaggagagccttcccaaagaattgcagcctatatggtggaggga |
617 |
Q |
| |
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| T |
40767944 |
aaatgaagaggaagcatcgtcaatgataaacaatctccgacgaattgtctcaattcaaggagagccttcccaaagaattgcagcctatatggtggaggga |
40768043 |
T |
|
| Q |
618 |
ctcgccgctcgcctcgctgaatccggaaaaagtatttatagagctttgaaatgcaaggaacctccttcttcagaccgtctagcagcgatgcagatattct |
717 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
40768044 |
ctcgccgctcgcctcgctgaatccggaaaaagtatttatagagctttgaaatgcaaggaacctccttcttcggaccgtctagcagcgatgcagatattgt |
40768143 |
T |
|
| Q |
718 |
tcga |
721 |
Q |
| |
|
|||| |
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|
| T |
40768144 |
tcga |
40768147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 412 - 713
Target Start/End: Complemental strand, 10093940 - 10093639
Alignment:
| Q |
412 |
cagattccaatattagcagcatcagtagcaccaccaaagaaata--acaaaaatttc-taggacccccaagcaacttctttatgaatgtgctactgcaat |
508 |
Q |
| |
|
||||||| ||| |||| |||| ||||||||||| |||||||| |||||| |||| | ||||||| |||||| | || ||||||||||||| ||| | |
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| T |
10093940 |
cagattcaaatcttagtagcaccagtagcacca---aagaaatatcacaaaactttcctcggaccccgaagcaattactatatgaatgtgctagcgcact |
10093844 |
T |
|
| Q |
509 |
ttcagaaggaaatgaagaggaagcatcgtcaatgataaacaatctccgacgaattgtctcaattcaaggagagccttcccaaagaattgcagcctatatg |
608 |
Q |
| |
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||||||||||||||||| |||| || | ||||| | ||||| | | | || |||||||| ||||| ||||| | |||||||||||||| ||| |
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| T |
10093843 |
ttcagaaggaaatgaagtaaaagcctcagctatgatcgatgatctcaggcagttggtttcaattcagggagaaccttcggatagaattgcagcctacatg |
10093744 |
T |
|
| Q |
609 |
gtggagggactcgccgctcgcctcgctgaatccggaaaaagtatttatagagctttgaaatgcaaggaacctccttcttcagaccgtctagcagcgatgc |
708 |
Q |
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||||| ||||| || ||||| | ||| ||| |||||| ||||||||| |||||||||||||||||||||||| ||||| || ||||||||||| |||| |
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| T |
10093743 |
gtggaaggacttgctgctcgtttggcttcatcgggaaaatgtatttataaagctttgaaatgcaaggaacctccgtcttctgatcgtctagcagcaatgc |
10093644 |
T |
|
| Q |
709 |
agata |
713 |
Q |
| |
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||||| |
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|
| T |
10093643 |
agata |
10093639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 10094415 - 10094324
Alignment:
| Q |
18 |
agcatgtatatgacagatgcttactcgagcgagagttacgagaagtatttccatgactcgaatacagaagaactgatagaaccatctagttc |
109 |
Q |
| |
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|||||||| |||| ||| |||||||||| ||||||||||| ||||| |||| ||| || |||||| |||||||||||||| |||||||| |
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| T |
10094415 |
agcatgtacatgaatgattcttactcgagtgagagttacgaaaagtacttccttgattcacctacagaggaactgatagaaccgtctagttc |
10094324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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