View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21488_low_10 (Length: 242)
Name: NF21488_low_10
Description: NF21488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21488_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 11843972 - 11843759
Alignment:
| Q |
11 |
tccaagaatatagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaacattggaatcataacaatat |
110 |
Q |
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| T |
11843972 |
tccaacaatgtagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaactttggaatcataacaatat |
11843873 |
T |
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| Q |
111 |
gaatctgaaggaagttgaaatgtcgaattaaccaaaatttcccactcaagcattgctggtgcatactccatattccccaactcattaaaagtacgcaaat |
210 |
Q |
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| T |
11843872 |
gaatctgaaggaagttgaaatgtcgaattaaccaaaatttcccactcaagcattgctggtgcatactccatattccccaactcattaaaagtactcaaat |
11843773 |
T |
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| Q |
211 |
atgacccatcaaaa |
224 |
Q |
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| T |
11843772 |
atgacccatcaaaa |
11843759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 11848686 - 11848489
Alignment:
| Q |
21 |
tagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaacattggaatcataac------aatatgaat |
114 |
Q |
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||||||||||| |||||||||| ||||||| |||| |||||||||| |||||||||||| |||||||| | ||||||||||| ||||||||| |
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| T |
11848686 |
tagggattgccaaagtaacccgagaagcattggcattgccgaccagtgtttctgttatttatggatgtaacttgggaatcataacaatttgaatatgaat |
11848587 |
T |
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| Q |
115 |
ctgaaggaagttgaaatgtcgaattaa------------ccaaaatttcccactcaagcattgctggtgcatactccatattccccaactcattaaaa |
200 |
Q |
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| T |
11848586 |
ctgaaggaagttgaaatgtagaattaatcaacatatcattcaaaatttcccactcaagcattgctggtgcatactccatatcctccaacttattaaaa |
11848489 |
T |
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