View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21488_low_4 (Length: 376)

Name: NF21488_low_4
Description: NF21488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21488_low_4
NF21488_low_4
[»] chr1 (18 HSPs)
chr1 (64-330)||(14256584-14256849)
chr1 (209-304)||(10199350-10199445)
chr1 (249-355)||(4699597-4699701)
chr1 (246-312)||(4768808-4768874)
chr1 (209-282)||(18327088-18327161)
chr1 (248-313)||(35925714-35925779)
chr1 (248-304)||(31118076-31118132)
chr1 (275-330)||(14629974-14630029)
chr1 (282-328)||(2522638-2522684)
chr1 (276-330)||(11211125-11211179)
chr1 (219-304)||(11639368-11639453)
chr1 (208-305)||(15579514-15579611)
chr1 (269-310)||(24146282-24146323)
chr1 (253-305)||(3597267-3597319)
chr1 (275-311)||(6102180-6102216)
chr1 (248-312)||(17778982-17779046)
chr1 (243-299)||(24968392-24968448)
chr1 (243-299)||(25432249-25432305)
[»] chr3 (16 HSPs)
chr3 (209-300)||(41644387-41644478)
chr3 (214-304)||(42745071-42745161)
chr3 (276-330)||(34414793-34414847)
chr3 (220-304)||(24785294-24785378)
chr3 (250-313)||(21574514-21574577)
chr3 (257-304)||(29771871-29771918)
chr3 (257-312)||(37273159-37273214)
chr3 (277-331)||(26542543-26542597)
chr3 (257-302)||(36200131-36200176)
chr3 (246-298)||(41724251-41724303)
chr3 (193-285)||(44014725-44014816)
chr3 (268-304)||(45432940-45432976)
chr3 (248-304)||(47249467-47249523)
chr3 (248-312)||(49465646-49465710)
chr3 (256-304)||(50952366-50952414)
chr3 (248-328)||(54180761-54180841)
[»] chr8 (16 HSPs)
chr8 (236-310)||(30277213-30277288)
chr8 (261-313)||(25869260-25869312)
chr8 (276-328)||(28769348-28769400)
chr8 (269-349)||(42215084-42215164)
chr8 (257-328)||(1112244-1112315)
chr8 (257-312)||(4281571-4281626)
chr8 (209-312)||(43504776-43504879)
chr8 (257-304)||(43704366-43704413)
chr8 (255-297)||(2594985-2595027)
chr8 (208-305)||(24258098-24258195)
chr8 (251-312)||(44401586-44401646)
chr8 (248-288)||(8629505-8629545)
chr8 (193-285)||(16162812-16162903)
chr8 (257-305)||(30191131-30191179)
chr8 (248-303)||(32840966-32841022)
chr8 (256-304)||(41606892-41606940)
[»] chr4 (7 HSPs)
chr4 (246-301)||(30631992-30632047)
chr4 (227-304)||(1137745-1137822)
chr4 (227-304)||(20936189-20936266)
chr4 (268-312)||(7694011-7694055)
chr4 (251-304)||(6428051-6428104)
chr4 (248-316)||(37575917-37575985)
chr4 (276-316)||(45927370-45927410)
[»] chr7 (10 HSPs)
chr7 (243-328)||(9038121-9038205)
chr7 (245-296)||(11047908-11047959)
chr7 (193-288)||(1645627-1645721)
chr7 (250-304)||(46082069-46082123)
chr7 (248-297)||(11048067-11048116)
chr7 (215-304)||(20553136-20553225)
chr7 (256-301)||(20888383-20888428)
chr7 (261-298)||(21247965-21248002)
chr7 (248-304)||(15740392-15740448)
chr7 (246-298)||(25670565-25670617)
[»] chr2 (14 HSPs)
chr2 (239-304)||(1647269-1647334)
chr2 (257-304)||(41809235-41809282)
chr2 (251-304)||(5133805-5133858)
chr2 (248-313)||(27237874-27237939)
chr2 (255-312)||(29316763-29316820)
chr2 (251-355)||(41817149-41817254)
chr2 (248-304)||(13220466-13220522)
chr2 (235-299)||(43827921-43827985)
chr2 (248-297)||(32614929-32614978)
chr2 (248-304)||(28677640-28677696)
chr2 (250-298)||(30538156-30538204)
chr2 (275-311)||(32848934-32848970)
chr2 (257-329)||(42131625-42131697)
chr2 (248-304)||(44606091-44606147)
[»] chr5 (6 HSPs)
chr5 (256-312)||(1899179-1899235)
chr5 (248-355)||(17368657-17368765)
chr5 (248-311)||(499712-499775)
chr5 (250-304)||(37794681-37794735)
chr5 (240-312)||(3977333-3977405)
chr5 (250-326)||(4619718-4619794)
[»] chr6 (8 HSPs)
chr6 (248-310)||(33832254-33832316)
chr6 (250-355)||(4420626-4420730)
chr6 (239-300)||(7931698-7931759)
chr6 (261-304)||(6536980-6537023)
chr6 (248-303)||(33089540-33089595)
chr6 (251-304)||(7945868-7945921)
chr6 (248-304)||(1575928-1575984)
chr6 (256-304)||(34403888-34403936)
[»] scaffold0311 (1 HSPs)
scaffold0311 (257-305)||(10607-10655)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 64 - 330
Target Start/End: Original strand, 14256584 - 14256849
Alignment:
Q  64 tcaaaacttatttacaattacaagtaagcttcttttaagatgtctttacattcacatatgatatgtgtttcaagttttaacaaattatgtttaagtactt 163  Q
    |||||| ||||||||||||||||| |  ||| ||||   ||||| ||||||||| ||||||||| |||||   |||||| ||||||||||||||||||||    
T  14256584 tcaaaatttatttacaattacaagaacacttgttttggcatgtccttacattcaaatatgatatttgtttatggtttta-caaattatgtttaagtactt 14256682  T
Q  164 tttatgtatatgaagatgatttagggcctttggcttattttagttttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaac 263  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14256683 tttatatatatgaagatgatttagggcctttggcttattttagttttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaac 14256782  T
Q  264 ttaggacatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaaaata 330  Q
    ||||||||||||||||||||||||| |||||||||| |||  || |||||| |||||||||||||||    
T  14256783 ttaggacatggtcataagttgttttcagcttatttcaatatgttatccatagttgtttatgaaaata 14256849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 10199350 - 10199445
Alignment:
Q  209 ttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||||||| |||||| ||||||| |||||||| | | |||| || |||| | |||| |||||| |||||||||||||| ||||||||| |||||    
T  10199350 ttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttattttcataa 10199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 355
Target Start/End: Original strand, 4699597 - 4699701
Alignment:
Q  249 acttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaaaataattatagataatacaaaa 348  Q
    |||||| ||||||||||| |||||| ||||||| |||||| |||||||||| ||||  |||||   || ||||||||||||||   | ||| ||||||||    
T  4699597 acttatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataagctctccgggatagtttatgaaaataa--ctggattatacaaaa 4699694  T
Q  349 atagttt 355  Q
    |||||||    
T  4699695 atagttt 4699701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 4768808 - 4768874
Alignment:
Q  246 aaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctcca 312  Q
    ||||||||  |||||| |||| ||||||  ||||| ||||||| |||||||||||||||||||||||    
T  4768808 aaaacttacgaaaacagcttacgacatgtccataacttgttttcagcttatttccataaattctcca 4768874  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 18327088 - 18327161
Alignment:
Q  209 ttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagt 282  Q
    |||||||||  |||||| |||| || |||||||| ||| ||||||| ||||||||||| |||||||| ||||||    
T  18327088 ttatctactgtcataagcacttttgacactatttggaagaacttatgaaaacaacttatgacatggttataagt 18327161  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 35925779 - 35925714
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccat 313  Q
    ||||||| |||||| |||| |||||| ||||||| |||||| | |||||||||||||| |||||||    
T  35925779 aacttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccat 35925714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 31118132 - 31118076
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||| |||||| |||| |||||| |||| ||||||||| |||||||||||||||    
T  31118132 aacttatgaaaacatcttatgacatgttcatcagttgttttcagcttatttccataa 31118076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 14629974 - 14630029
Alignment:
Q  275 tcataagttgttttaagcttatttccataaattctccataattgtttatgaaaata 330  Q
    |||||||||||||| |||||||||||||||| ||||||  || | |||||||||||    
T  14629974 tcataagttgttttcagcttatttccataaagtctccaagatagcttatgaaaata 14630029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 2522684 - 2522638
Alignment:
Q  282 ttgttttaagcttatttccataaattctccataattgtttatgaaaa 328  Q
    ||||||| | ||||||||||||||||||||| ||| |||||||||||    
T  2522684 ttgttttcaacttatttccataaattctccagaatagtttatgaaaa 2522638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 11211179 - 11211125
Alignment:
Q  276 cataagttgttttaagcttatttccataaattctccataattgtttatgaaaata 330  Q
    ||||||||||||| | |||||||||||||| |||||||||  | |||||||||||    
T  11211179 cataagttgtttttaacttatttccataaactctccataacagcttatgaaaata 11211125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 11639368 - 11639453
Alignment:
Q  219 gcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||||||||| ||  || |||||||| | ||||| |||||| |||| ||||||  |||||| |||||| ||||||||| |||||    
T  11639368 gcataagaacttttgagacaatttagaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataa 11639453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 15579611 - 15579514
Alignment:
Q  208 tttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaa 305  Q
    ||||||||||||||||||||||||    ||| ||| | | | ||| |  |||||||||| ||||||  ||||||||||| | ||||||||||||||||    
T  15579611 tttatctactagcataagaacttgcaagactgtttgggagagcttgtggaaacaacttatgacatgtccataagttgttctcagcttatttccataaa 15579514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 24146282 - 24146323
Alignment:
Q  269 acatggtcataagttgttttaagcttatttccataaattctc 310  Q
    |||||||||||||| ||||| |||||||||||||||| ||||    
T  24146282 acatggtcataagtagtttttagcttatttccataaactctc 24146323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 3597267 - 3597319
Alignment:
Q  253 ataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaa 305  Q
    ||||||| |||||| ||||||| |||||| | |||| ||||||||||||||||    
T  3597267 ataaaaataacttatgacatggccataagctattttcagcttatttccataaa 3597319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 6102216 - 6102180
Alignment:
Q  275 tcataagttgttttaagcttatttccataaattctcc 311  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  6102216 tcataaattgttttcagcttatttccataaattctcc 6102180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 17779046 - 17778982
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctcca 312  Q
    |||||||||||||||||||  || || ||||||  |||||| | |||||||||| ||||||||||    
T  17779046 aacttataaaaacaacttataacgtgttcataaactgttttcaccttatttccaaaaattctcca 17778982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 24968392 - 24968448
Alignment:
Q  243 agaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttc 299  Q
    |||||| ||||||||||||||||| ||||||  |||||| |||||  ||||||||||    
T  24968392 agaaaagcttataaaaacaacttatgacatgtccataagctgtttctagcttatttc 24968448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 25432305 - 25432249
Alignment:
Q  243 agaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttc 299  Q
    |||||| ||||||||||||||||| ||||||  |||||| |||||  ||||||||||    
T  25432305 agaaaagcttataaaaacaacttatgacatgtccataagctgtttctagcttatttc 25432249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 41644387 - 41644478
Alignment:
Q  209 ttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttcc 300  Q
    ||||||||||||||||| ||||| | |||| ||||| | |||||||||||||||||| ||||||  ||||||| |||||| |||||||||||    
T  41644387 ttatctactagcataagcacttgagacactgtttaggagaacttataaaaacaacttgggacattttcataagctgttttcagcttatttcc 41644478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 42745161 - 42745071
Alignment:
Q  214 tactagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||| |||||| |||||||  | ||||||||| || ||||  |||||||||| |||||| |||||||||||||| | |||||||||||||    
T  42745161 tactatcataagcacttgtgatattatttagaagaatttatgtaaacaacttatgacatgttcataagttgttttcatcttatttccataa 42745071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 34414793 - 34414847
Alignment:
Q  276 cataagttgttttaagcttatttccataaattctccataattgtttatgaaaata 330  Q
    ||||||||||||| ||||||||| |||||| ||||||| || |||||||||||||    
T  34414793 cataagttgttttcagcttattttcataaactctccatgatagtttatgaaaata 34414847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 24785378 - 24785294
Alignment:
Q  220 cataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||| ||||||| |||| ||| | | |||||| ||||||| ||||||||||  |||||||||||||| || |||||| |||||    
T  24785378 cataagcacttgtgacactgtttcggagaacttacaaaaacatcttaggacattttcataagttgtttttagtttattttcataa 24785294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 21574577 - 21574514
Alignment:
Q  250 cttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccat 313  Q
    ||||| ||||||||||| |||||| ||||||| || ||| |||||||||||||||  |||||||    
T  21574577 cttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctccat 21574514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 29771918 - 29771871
Alignment:
Q  257 aaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||||||||||||||  ||||||||||||| | |||||||||||||    
T  29771918 aaacaacttaggacatgtccataagttgttttcaacttatttccataa 29771871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 37273214 - 37273159
Alignment:
Q  257 aaacaacttaggacatggtcataagttgttttaagcttatttccataaattctcca 312  Q
    |||||||||| ||||||  ||||||||||||| | ||||||||||||| |||||||    
T  37273214 aaacaacttatgacatgtccataagttgttttcaacttatttccataagttctcca 37273159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 26542597 - 26542543
Alignment:
Q  277 ataagttgttttaagcttatttccataaattctccataattgtttatgaaaataa 331  Q
    |||| ||||||| | |||||||||||||| |||||||||| | ||||||||||||    
T  26542597 ataacttgttttcaacttatttccataaactctccataatagcttatgaaaataa 26542543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 36200176 - 36200131
Alignment:
Q  257 aaacaacttaggacatggtcataagttgttttaagcttatttccat 302  Q
    |||||||||| ||||||  ||||||||||||| |||||||||||||    
T  36200176 aaacaacttatgacatgtccataagttgttttcagcttatttccat 36200131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 41724303 - 41724251
Alignment:
Q  246 aaaacttataaaaacaacttaggacatggtcataagttgttttaagcttattt 298  Q
    |||||||||  |||||||||| ||||||  ||||||||||||| |||||||||    
T  41724303 aaaacttatggaaacaacttatgacatgtccataagttgttttcagcttattt 41724251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 44014725 - 44014816
Alignment:
Q  193 ttggcttattttagttttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgt 285  Q
    ||||||||||| ||||| ||||||||||||||  |||||||  ||| |||   ||||||||| |||||| |||| ||| || |||||||||||    
T  44014725 ttggcttatttgagttt-atctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgacctgttcataagttgt 44014816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 45432940 - 45432976
Alignment:
Q  268 gacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||| |||||||||||||| |||||||||||||||    
T  45432940 gacatgttcataagttgttttcagcttatttccataa 45432976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 47249467 - 47249523
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||| ||||| ||||| |||||| ||||||||||||||  |||||||| |||||    
T  47249467 aacttatgaaaaccacttatgacatgttcataagttgtttttggcttattttcataa 47249523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 49465646 - 49465710
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctcca 312  Q
    ||||||| |||||| ||||  ||||| |||| || | |||||||||||||||||||| |||||||    
T  49465646 aacttatgaaaacagcttattacatgttcattaggttttttaagcttatttccataagttctcca 49465710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 50952414 - 50952366
Alignment:
Q  256 aaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||| |||| |||||| ||||||  ||||||||||||||||||||||    
T  50952414 aaaacagcttatgacatgttcataaactgttttaagcttatttccataa 50952366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 328
Target Start/End: Original strand, 54180761 - 54180841
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaaaa 328  Q
    ||||| || ||||| |||| ||||||  ||||||||||||| |||||||||  ||||  |||||||||| | |||||||||    
T  54180761 aacttgtagaaacagcttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaa 54180841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 30277213 - 30277288
Alignment:
Q  236 actatttagaaaaacttat-aaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctc 310  Q
    ||||||||| ||||||| | ||||| | |||||||||||| ||||||||||||| |||||||||||||||| ||||    
T  30277213 actatttaggaaaacttctgaaaaatagcttaggacatggccataagttgttttcagcttatttccataaactctc 30277288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 25869260 - 25869312
Alignment:
Q  261 aacttaggacatggtcataagttgttttaagcttatttccataaattctccat 313  Q
    |||||| ||||||  ||||||||||||| |||||||||||||||| |||||||    
T  25869260 aacttatgacatgtccataagttgttttcagcttatttccataaactctccat 25869312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 28769348 - 28769400
Alignment:
Q  276 cataagttgttttaagcttatttccataaattctccataattgtttatgaaaa 328  Q
    ||||||||||||| |||||||||||||||| |||||| ||| | |||||||||    
T  28769348 cataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaa 28769400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 42215084 - 42215164
Alignment:
Q  269 acatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaaaataattatagataatacaaaaa 349  Q
    ||||| |||||||||||||| ||||||||| |||||  ||||||  || | ||||||||||| |||||||| |||| ||||    
T  42215084 acatgttcataagttgttttcagcttatttacataagctctccaagatagcttatgaaaatatttatagatgatacgaaaa 42215164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 1112315 - 1112244
Alignment:
Q  257 aaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaaaa 328  Q
    |||||||||| ||| || |||||| ||||||| | ||||||||||||| |||||||  ||||| ||||||||    
T  1112315 aaacaacttatgacctgctcataacttgttttcaacttatttccataagttctccaggattgtatatgaaaa 1112244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 4281626 - 4281571
Alignment:
Q  257 aaacaacttaggacatggtcataagttgttttaagcttatttccataaattctcca 312  Q
    ||||||| || |||||| |||||||||||||| | ||||||| |||||||||||||    
T  4281626 aaacaacatatgacatgttcataagttgttttcatcttattttcataaattctcca 4281571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 43504879 - 43504776
Alignment:
Q  209 ttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattc 308  Q
    ||||||||| || |||| |||||||  ||| ||| | | |||| || ||||||||||| ||| || | ||||| |||||| ||||||||||||||| |||    
T  43504879 ttatctactggcttaagcacttgtgtgactgtttcggagaactgatgaaaacaacttacgacttgtttataagctgttttcagcttatttccataagttc 43504780  T
Q  309 tcca 312  Q
    ||||    
T  43504779 tcca 43504776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 43704366 - 43704413
Alignment:
Q  257 aaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||||||| |||||| ||||||  ||||||||||||||||||||||    
T  43704366 aaacaacttatgacatgttcataaactgttttaagcttatttccataa 43704413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 2594985 - 2595027
Alignment:
Q  255 aaaaacaacttaggacatggtcataagttgttttaagcttatt 297  Q
    |||||||||||| |||||| |||||||||||||| ||||||||    
T  2594985 aaaaacaacttatgacatgttcataagttgttttcagcttatt 2595027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 24258195 - 24258098
Alignment:
Q  208 tttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaa 305  Q
    |||||||| ||| |||| ||||| ||  ||||||||||| | ||| | ||||||| ||| ||||||  |||| ||| |||||||||||||| ||||||    
T  24258195 tttatctagtagtataaaaacttatgaaactatttagaagagcttgtgaaaacaatttatgacatgtacataggttattttaagcttatttacataaa 24258098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 44401646 - 44401586
Alignment:
Q  251 ttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctcca 312  Q
    ||||| ||||||||||| ||||| |||||  ||||||| ||||||||||||||| |||||||    
T  44401646 ttatagaaacaacttag-acatgttcatacattgttttcagcttatttccataagttctcca 44401586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 8629545 - 8629505
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgtttt 288  Q
    ||||||| ||||||||||| |||||| ||||||||||||||    
T  8629545 aacttatgaaaacaacttatgacatgatcataagttgtttt 8629505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 16162903 - 16162812
Alignment:
Q  193 ttggcttattttagttttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgt 285  Q
    ||||||||||| ||||| ||||||||||||||  |||||||  ||| |||   ||||||||| |||||| |||| ||| || |||||||||||    
T  16162903 ttggcttatttgagttt-atctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgacctgttcataagttgt 16162812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 30191131 - 30191179
Alignment:
Q  257 aaacaacttaggacatggtcataagttgttttaagcttatttccataaa 305  Q
    |||||||||| |||||| ||| || ||||||| ||||||||||||||||    
T  30191131 aaacaacttatgacatgttcaaaacttgttttcagcttatttccataaa 30191179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 32840966 - 32841022
Alignment:
Q  248 aacttataaaaacaacttaggacatggt-cataagttgttttaagcttatttccata 303  Q
    ||||||| ||||||||||| ||||| || ||||||||||||| ||||||||| ||||    
T  32840966 aacttatgaaaacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 41606892 - 41606940
Alignment:
Q  256 aaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||| |||| |||||| ||| |||||||||| |||||||||||||||    
T  41606892 aaaacagcttatgacatgttcaaaagttgttttcagcttatttccataa 41606940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 30632047 - 30631992
Alignment:
Q  246 aaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttcca 301  Q
    ||||||||||||||||||||| | |||| ||||||| |||||||||||||||||||    
T  30632047 aaaacttataaaaacaacttatggcatgttcataagctgttttaagcttatttcca 30631992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 1137822 - 1137745
Alignment:
Q  227 acttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||| |||| ||||| | ||||||| |||||| |||| |||||| |||||||||||||| || ||||||||||||    
T  1137822 acttgtgacactgtttaggagaacttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataa 1137745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 20936189 - 20936266
Alignment:
Q  227 acttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||| |||| ||| | ||||||||| ||||||||||| || ||| ||||||| |||||| | |||||||||||||    
T  20936189 acttgtgacactgtttcgtaaaacttatgaaaacaacttatgatatgttcataagctgttttcaccttatttccataa 20936266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 7694011 - 7694055
Alignment:
Q  268 gacatggtcataagttgttttaagcttatttccataaattctcca 312  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||    
T  7694011 gacatgttcataagttgttttcagcttatttccataaactctcca 7694055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 6428104 - 6428051
Alignment:
Q  251 ttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||| ||||||||||| ||||||  ||||||||| ||||||| |||||||||||    
T  6428104 ttatgaaaacaacttatgacatgtccataagttgatttaagcatatttccataa 6428051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 37575917 - 37575985
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccataat 316  Q
    ||||||| |||| ||||||  ||||  |||||||||||||| |||| ||||||||||| ||| ||||||    
T  37575917 aacttatgaaaataacttataacatactcataagttgttttcagctcatttccataaactcttcataat 37575985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 45927410 - 45927370
Alignment:
Q  276 cataagttgttttaagcttatttccataaattctccataat 316  Q
    |||||| |||||| |||||||||||||||| ||||||||||    
T  45927410 cataagctgttttcagcttatttccataaactctccataat 45927370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 328
Target Start/End: Complemental strand, 9038205 - 9038121
Alignment:
Q  243 agaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaaaa 328  Q
    |||| |||||||||||||| |||| |||||| |||||| ||||||| ||||||||| || || |||||||| || |||||||||||    
T  9038205 agaagaacttataaaaacagcttatgacatgttcataa-ttgttttcagcttattttcacaagttctccatgatagtttatgaaaa 9038121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 11047959 - 11047908
Alignment:
Q  245 aaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttat 296  Q
    |||||||||||||||||||||| |||||| ||||||| |||||| |||||||    
T  11047959 aaaaacttataaaaacaacttatgacatgttcataagctgtttttagcttat 11047908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 1645627 - 1645721
Alignment:
Q  193 ttggcttattttagttttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgtttt 288  Q
    |||| |||||||||||| |||||||  |||||| | |||||||||| | | | |||||||||  |||||||||| |||||| | ||||||||||||    
T  1645627 ttggattattttagttt-atctactgacataagcaattgtggcactgtctgggaaaacttatgtaaacaacttatgacatgtttataagttgtttt 1645721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 46082123 - 46082069
Alignment:
Q  250 cttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||| ||||||||||| ||||||  ||||||||||||| ||||||||| |||||    
T  46082123 cttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataa 46082069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 11048116 - 11048067
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatt 297  Q
    ||||||| ||||||||||| |||||| ||||||| |||||| ||||||||    
T  11048116 aacttatcaaaacaacttatgacatgttcataagctgttttcagcttatt 11048067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 20553225 - 20553136
Alignment:
Q  215 actagcataagaacttgtggcactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||||||| |||||||  ||| || || | | |||||  ||||| |||| |||||| |||||||||||||| || ||||||||||||    
T  20553225 actagcataagcacttgtgagactgttcaggagagcttatggaaacagcttacgacatgttcataagttgttttcagattatttccataa 20553136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 20888383 - 20888428
Alignment:
Q  256 aaaacaacttaggacatggtcataagttgttttaagcttatttcca 301  Q
    ||||||||||| | |||| |||||||||||||| ||||||||||||    
T  20888383 aaaacaacttatgccatgttcataagttgttttcagcttatttcca 20888428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 21248002 - 21247965
Alignment:
Q  261 aacttaggacatggtcataagttgttttaagcttattt 298  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  21248002 aacttatgacatgttcataagttgttttaagcttattt 21247965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 15740392 - 15740448
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||| ||||||||||| |||||| ||||||| |||||| | ||||||| |||||    
T  15740392 aacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttcataa 15740448  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 25670565 - 25670617
Alignment:
Q  246 aaaacttataaaaacaacttaggacatggtcataagttgttttaagcttattt 298  Q
    ||||||||| ||||||||||| |||||| | |||| ||||||| |||||||||    
T  25670565 aaaacttatgaaaacaacttatgacatgttaataaattgttttcagcttattt 25670617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 1647334 - 1647269
Alignment:
Q  239 atttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||||| ||||||| |||||| |||| |||||| ||||||| |||||| |||||||||||||||    
T  1647334 atttagaagaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataa 1647269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 41809235 - 41809282
Alignment:
Q  257 aaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||||||| |||||| |||||||||||||| |||||||||||||||    
T  41809235 aaacaacttatgacatgttcataagttgtttttagcttatttccataa 41809282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 5133858 - 5133805
Alignment:
Q  251 ttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||||||||||||| |||||||||||||| |  ||| |||||||||||||||    
T  5133858 ttataaaaacaacttatgacatggtcataagctactttcagcttatttccataa 5133805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 27237874 - 27237939
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccat 313  Q
    |||||||| ||||| |||| ||||||  |||||| |||||| |||||||||||||||| |||||||    
T  27237874 aacttatagaaacagcttatgacatgtacataagctgtttttagcttatttccataaactctccat 27237939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 29316763 - 29316820
Alignment:
Q  255 aaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctcca 312  Q
    ||||||| |||| |||||| ||||||||| |||| ||||||||||||||| |||||||    
T  29316763 aaaaacagcttatgacatgttcataagttcttttcagcttatttccataagttctcca 29316820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 355
Target Start/End: Complemental strand, 41817254 - 41817149
Alignment:
Q  251 ttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaaaata-attatagataatacaaaaa 349  Q
    |||| |||||| |||| |||||| | |||| ||||||| |||||||||||||||  ||||||  || |||||||||||||  ||| | || |||||||||    
T  41817254 ttatgaaaacatcttatgacatgttgataatttgttttcagcttatttccataagctctccaggatagtttatgaaaatagcttacacattatacaaaaa 41817155  T
Q  350 tagttt 355  Q
    ||||||    
T  41817154 tagttt 41817149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 13220522 - 13220466
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||||||||||||||| ||| || ||||||| |||||||| ||||||| |||||    
T  13220522 aacttataaaaacaacttatgacttgttcataagctgttttaaacttatttgcataa 13220466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 43827921 - 43827985
Alignment:
Q  235 cactatttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttc 299  Q
    |||| ||||| |||||||||||||||| |||| |||||| |||||||||| ||| | ||||||||    
T  43827921 cactgtttagtaaaacttataaaaacagcttatgacatgttcataagttgcttttaacttatttc 43827985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 32614929 - 32614978
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatt 297  Q
    ||||||||||||||||||| |||||| ||||| |||||||| || |||||    
T  32614929 aacttataaaaacaacttatgacatgttcatatgttgttttcagattatt 32614978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 28677640 - 28677696
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||| |||||| |||| |||||  ||||||||||||||  ||||||||||||||    
T  28677640 aacttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataa 28677696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 30538156 - 30538204
Alignment:
Q  250 cttataaaaacaacttaggacatggtcataagttgttttaagcttattt 298  Q
    |||||| |||||||||| ||||||  ||||||||||||| |||||||||    
T  30538156 cttatagaaacaacttatgacatgtccataagttgttttcagcttattt 30538204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 32848970 - 32848934
Alignment:
Q  275 tcataagttgttttaagcttatttccataaattctcc 311  Q
    ||||||||||| || ||||||||||||||||||||||    
T  32848970 tcataagttgtgtttagcttatttccataaattctcc 32848934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 42131697 - 42131625
Alignment:
Q  257 aaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaaaat 329  Q
    ||||||||||  |||||  |||||| || ||||||||||||||| ||| |||||||| || | ||||||||||    
T  42131697 aaacaacttataacatgtccataagctgctttaagcttatttccttaagttctccatgatagcttatgaaaat 42131625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 44606091 - 44606147
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||| ||||||||||| ||||||  ||||||||||||| |||| |||| |||||    
T  44606091 aacttatgaaaacaacttatgacatgtccataagttgttttcagctgattttcataa 44606147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 1899235 - 1899179
Alignment:
Q  256 aaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctcca 312  Q
    |||||| |||| ||||||  ||||||||||||| |||||||||||||||||||||||    
T  1899235 aaaacagcttatgacatgtgcataagttgttttcagcttatttccataaattctcca 1899179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 355
Target Start/End: Complemental strand, 17368765 - 17368657
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaaaataa-ttatagataatacaa 346  Q
    ||||||| ||||||||||| |||||| ||||| |  ||||| |||||||||||||||  ||||||  || | ||||||||| || |||||||| | ||||    
T  17368765 aacttatgaaaacaacttatgacatgttcatatgcagttttcagcttatttccataacctctccaagatagcttatgaaaacaacttatagattacacaa 17368666  T
Q  347 aaatagttt 355  Q
    ||| |||||    
T  17368665 aaacagttt 17368657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 499712 - 499775
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctcc 311  Q
    ||||||| |||||| |||| |||||| | | |||||||||| |||||||||||||||| |||||    
T  499712 aacttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 499775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 37794681 - 37794735
Alignment:
Q  250 cttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||| ||||||||||| |||||| ||||||| |||||| |||||||||| ||||    
T  37794681 cttatgaaaacaacttatgacatgttcataagctgttttgagcttatttcgataa 37794735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 3977405 - 3977333
Alignment:
Q  240 tttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctcca 312  Q
    ||||||||||||||| |||||| |||| |||||| || | || ||| || ||||||||| ||||| |||||||    
T  3977405 tttagaaaaacttatgaaaacagcttatgacatgttccttagctgtcttcagcttattttcataatttctcca 3977333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 4619794 - 4619718
Alignment:
Q  250 cttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaa 326  Q
    ||||| ||||||||| | |||||| ||||||| || ||| | ||||||||||||| |||||||| || | |||||||    
T  4619794 cttatgaaaacaactaatgacatgttcataagctggtttcaccttatttccataagttctccatgatagcttatgaa 4619718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 33832254 - 33832316
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctc 310  Q
    ||||||| ||||||||||| |||||| | |||||||||||| ||||||||| |||| ||||||    
T  33832254 aacttatgaaaacaacttatgacatgtttataagttgtttttagcttattttcatatattctc 33832316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 4420730 - 4420626
Alignment:
Q  250 cttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataaattctccataattgtttatgaaaataattatagataatacaaaaa 349  Q
    |||||| |||||| ||| |||||| ||||||| |||||| |||||||||||||||  ||||||  || | ||| |||||||| | ||| | |||||||||    
T  4420730 cttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagatagcttaggaaaataact-tagcttatacaaaaa 4420632  T
Q  350 tagttt 355  Q
    ||||||    
T  4420631 tagttt 4420626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 7931698 - 7931759
Alignment:
Q  239 atttagaaaaacttataaaaacaacttaggacatggtcataagttgttttaagcttatttcc 300  Q
    |||||||| | ||||| ||||||||||| |||||| || ||||||||||| |||||||||||    
T  7931698 atttagaagagcttatgaaaacaacttatgacatgttcttaagttgttttcagcttatttcc 7931759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 6537023 - 6536980
Alignment:
Q  261 aacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||||| |||||| |||||||||||||| |||||||||||||||    
T  6537023 aacttatgacatgttcataagttgttttcagcttatttccataa 6536980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 33089595 - 33089540
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccata 303  Q
    ||||||| |||||| ||||||||||| | ||||||||||||| |||||||| ||||    
T  33089595 aacttatgaaaacagcttaggacatgtttataagttgttttacgcttattttcata 33089540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 7945868 - 7945921
Alignment:
Q  251 ttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    |||| ||||||||||| | |||| | || |||||||||||||||||||||||||    
T  7945868 ttatgaaaacaacttatggcatgtttattagttgttttaagcttatttccataa 7945921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 1575984 - 1575928
Alignment:
Q  248 aacttataaaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||| ||||||||||| |||||| ||||||| |||||| | ||||||| |||||    
T  1575984 aacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttcataa 1575928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 34403936 - 34403888
Alignment:
Q  256 aaaacaacttaggacatggtcataagttgttttaagcttatttccataa 304  Q
    ||||||||||| |||||| ||||||| |||||| | |||||||||||||    
T  34403936 aaaacaacttatgacatgttcataaggtgttttcaccttatttccataa 34403888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 10607 - 10655
Alignment:
Q  257 aaacaacttaggacatggtcataagttgttttaagcttatttccataaa 305  Q
    |||||||| | ||||||  ||||||||||||| ||||||||||||||||    
T  10607 aaacaactaatgacatgtccataagttgttttcagcttatttccataaa 10655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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