View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21488_low_6 (Length: 301)

Name: NF21488_low_6
Description: NF21488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21488_low_6
NF21488_low_6
[»] chr1 (1 HSPs)
chr1 (1-285)||(36728132-36728422)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 36728422 - 36728132
Alignment:
Q  1 tggcagataacatgtttctatggttaccaagaagg-cgtgattcttggaatttgttgcatcagctagaaaacgaatcaagcctaccatgatgtattattg 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36728422 tggcagataacatgtttctatggttaccaagaaggacgtgattcttggaatttgttgcatcagctagaaaatgaatcaagcctaccatgatgtattattg 36728323  T
Q  100 gtggtttcaatgatattctttcttttgatgaaaaaagaggcaggacggatagatcaaaataagctcatcaa---tggtttccgtgaggcattaacaaatg 196  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||   ||||||||||||||||||||||||||    
T  36728322 gtggtttcaatgatattctttcttttgatgaaaaaaggggcagggcggatagatc-aaataagctcatcaatattggtttccgtgaggcattaacaaatg 36728224  T
Q  197 cgggtttgattg---atttgaatatggaggggtaactcgaccatacaatgactataaacaactggtgtagtatgttttcagagtgcttaact 285  Q
     |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36728223 tgggtttgattgattatttgaatatggaggggtaactcgaccatacaatgactataaacaactggtgtagtatgttttcagagtgcttaact 36728132  T

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