View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21489_low_1 (Length: 434)

Name: NF21489_low_1
Description: NF21489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21489_low_1
NF21489_low_1
[»] chr7 (9 HSPs)
chr7 (187-262)||(5976364-5976439)
chr7 (203-262)||(9784718-9784777)
chr7 (203-262)||(14603035-14603094)
chr7 (203-262)||(35456031-35456090)
chr7 (203-262)||(39342424-39342483)
chr7 (203-262)||(40495944-40496003)
chr7 (203-251)||(42816760-42816808)
chr7 (203-262)||(2411539-2411598)
chr7 (203-262)||(23548384-23548443)
[»] chr1 (6 HSPs)
chr1 (203-262)||(48953772-48953831)
chr1 (203-262)||(15467750-15467809)
chr1 (218-262)||(946607-946651)
chr1 (320-348)||(21267715-21267743)
chr1 (215-247)||(28632395-28632427)
chr1 (218-262)||(41822961-41823005)
[»] chr8 (9 HSPs)
chr8 (203-262)||(29482603-29482662)
chr8 (203-262)||(29257148-29257207)
chr8 (203-241)||(14486-14524)
chr8 (193-259)||(24045191-24045256)
chr8 (213-251)||(31976940-31976978)
chr8 (204-241)||(40733900-40733937)
chr8 (320-348)||(1088190-1088218)
chr8 (218-262)||(28324474-28324518)
chr8 (215-247)||(29611593-29611625)
[»] chr5 (7 HSPs)
chr5 (203-262)||(41762008-41762067)
chr5 (213-262)||(927528-927577)
chr5 (193-262)||(22303645-22303713)
chr5 (191-242)||(8255176-8255228)
chr5 (217-261)||(24402589-24402633)
chr5 (203-262)||(22302698-22302757)
chr5 (218-262)||(22305016-22305060)
[»] chr4 (5 HSPs)
chr4 (203-262)||(35470349-35470408)
chr4 (204-262)||(41139700-41139758)
chr4 (193-247)||(10354575-10354628)
chr4 (217-262)||(9449651-9449696)
chr4 (213-262)||(40548042-40548091)
[»] chr3 (11 HSPs)
chr3 (203-262)||(36397775-36397834)
chr3 (213-262)||(30767522-30767571)
chr3 (193-262)||(42005730-42005798)
chr3 (218-262)||(7302618-7302662)
chr3 (218-262)||(37054621-37054665)
chr3 (218-261)||(30766781-30766824)
chr3 (203-262)||(34088798-34088857)
chr3 (203-262)||(53470214-53470273)
chr3 (213-251)||(31189192-31189230)
chr3 (192-242)||(50168465-50168514)
chr3 (218-262)||(24241989-24242033)
[»] chr2 (9 HSPs)
chr2 (203-262)||(33189053-33189112)
chr2 (203-262)||(39630451-39630510)
chr2 (218-262)||(7167469-7167513)
chr2 (218-261)||(30698509-30698552)
chr2 (193-262)||(7227789-7227857)
chr2 (213-262)||(11141532-11141581)
chr2 (193-262)||(11606941-11607009)
chr2 (217-262)||(29278825-29278870)
chr2 (191-247)||(30265543-30265598)
[»] scaffold0129 (1 HSPs)
scaffold0129 (213-251)||(19582-19620)
[»] scaffold0400 (1 HSPs)
scaffold0400 (203-251)||(4285-4333)
[»] scaffold0365 (1 HSPs)
scaffold0365 (203-251)||(4929-4977)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 5976364 - 5976439
Alignment:
Q  187 aaagttaggggtcaattttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5976364 aaagttaggggtcaattttgcaataatttggaaatttattggggtcaatttgaaaaatttggaaagtatgaggacc 5976439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 9784718 - 9784777
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  9784718 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 9784777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 14603035 - 14603094
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  14603035 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 14603094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 35456090 - 35456031
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  35456090 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 35456031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 39342424 - 39342483
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  39342424 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 39342483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 40496003 - 40495944
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  ||||||||||| |||||||||||||||||  |||||||| ||||||||||    
T  40496003 tttgcaattttttggaaattttttggggtcaatttgaaatttttggaaaatatgaggacc 40495944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 42816808 - 42816760
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaa 251  Q
    ||||||||  |||||||||||||||||||||||||||||  ||||||||    
T  42816808 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaa 42816760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 2411598 - 2411539
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  ||||||||||||||||| |||||||||||  |||||||| | ||||||||    
T  2411598 tttgcaattttttggaaatttattgggttcaatttgaaatttttggaaaatttgaggacc 2411539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 23548384 - 23548443
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||| ||||||||||||||  |||||||| | ||||||||    
T  23548384 tttgcaattttttggaaatttattagggtcaatttgaaatttttggaaaatttgaggacc 23548443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 48953831 - 48953772
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  48953831 tttgcaattttttggaaatttattggggtcaaattgaaaattttggaaagtttgaggacc 48953772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 15467750 - 15467809
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  15467750 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 15467809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 946651 - 946607
Alignment:
Q  218 aaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||||||||||||||||  |||||||| | ||||||||    
T  946651 aaatttattggggtcaatttgaaatttttggaaaatttgaggacc 946607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 21267715 - 21267743
Alignment:
Q  320 ggtgtcatttgaaattctctaaatttaaa 348  Q
    |||||||||||||||||||||||||||||    
T  21267715 ggtgtcatttgaaattctctaaatttaaa 21267743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 28632395 - 28632427
Alignment:
Q  215 tggaaatttattggggtcaatttgaaaagtttg 247  Q
    |||||||||||||||||||||||||||| ||||    
T  28632395 tggaaatttattggggtcaatttgaaaattttg 28632427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 41822961 - 41823005
Alignment:
Q  218 aaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||||||||| ||||||| |||||||| | ||||||||    
T  41822961 aaatttattggggtcaaattgaaaattttggaaactttgaggacc 41823005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 29482603 - 29482662
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  29482603 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 29482662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 29257148 - 29257207
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  ||||||||||||||||||||||||||||   |||||||| | ||||||||    
T  29257148 tttgcaattttttggaaatttattggggtcaatttgaattttttggaaaatttgaggacc 29257207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 14524 - 14486
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaa 241  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  14524 tttgcaattttttggaaatttattggggtcaatttgaaa 14486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 24045256 - 24045191
Alignment:
Q  193 aggggtcaattttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgagg 259  Q
    |||||||||||| |||||  |||  ||||||||||||||||| ||||||| |||||||||| |||||    
T  24045256 aggggtcaattt-gcaattttttataaatttattggggtcaaattgaaaattttggaaagtttgagg 24045191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 31976940 - 31976978
Alignment:
Q  213 tttggaaatttattggggtcaatttgaaaagtttggaaa 251  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  31976940 tttggaaatttattggggtcaatttgaaatttttggaaa 31976978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 40733900 - 40733937
Alignment:
Q  204 ttgcaataatttggaaatttattggggtcaatttgaaa 241  Q
    |||||||  |||||||||||||||||||||||||||||    
T  40733900 ttgcaattttttggaaatttattggggtcaatttgaaa 40733937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 1088190 - 1088218
Alignment:
Q  320 ggtgtcatttgaaattctctaaatttaaa 348  Q
    |||||||||||||||||||||||||||||    
T  1088190 ggtgtcatttgaaattctctaaatttaaa 1088218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 28324474 - 28324518
Alignment:
Q  218 aaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    |||||||||||| |||| ||||||| |||||||||| ||||||||    
T  28324474 aaatttattgggatcaagttgaaaattttggaaagtttgaggacc 28324518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 29611625 - 29611593
Alignment:
Q  215 tggaaatttattggggtcaatttgaaaagtttg 247  Q
    |||||||||||||||||||||||||||| ||||    
T  29611625 tggaaatttattggggtcaatttgaaaaatttg 29611593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 41762008 - 41762067
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  41762008 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 41762067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 927577 - 927528
Alignment:
Q  213 tttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  927577 tttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 927528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 22303645 - 22303713
Alignment:
Q  193 aggggtcaattttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    |||||||||||| |||||  |||  ||||||||||||||||| ||||||| |||||||||| ||||||||    
T  22303645 aggggtcaattt-gcaattttttataaatttattggggtcaaattgaaaattttggaaagtttgaggacc 22303713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 8255228 - 8255176
Alignment:
Q  191 ttaggggtcaatttt-gcaataatttggaaatttattggggtcaatttgaaaa 242  Q
    ||||||||||||| | |||||  ||||||||||||||||||||||||||||||    
T  8255228 ttaggggtcaattatagcaattttttggaaatttattggggtcaatttgaaaa 8255176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 24402589 - 24402633
Alignment:
Q  217 gaaatttattggggtcaatttgaaaagtttggaaagtatgaggac 261  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||    
T  24402589 gaaatttattggggtcaatttgaaaattttcgaaaatatgaggac 24402633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 22302757 - 22302698
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||| || |||| |||||||| | ||||||||    
T  22302757 tttgcaattttttggaaatttattggggtcaaattaaaaaatttggaaaatttgaggacc 22302698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 22305016 - 22305060
Alignment:
Q  218 aaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||||||||| ||||||| |||||||| | ||||||||    
T  22305016 aaatttattggggtcaaattgaaaattttggaaaatttgaggacc 22305060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 35470408 - 35470349
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  35470408 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 35470349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 41139758 - 41139700
Alignment:
Q  204 ttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    |||||||  |||||||||||||| ||||||||||||||| |||||||| | ||||||||    
T  41139758 ttgcaattttttggaaatttatttgggtcaatttgaaaattttggaaaatttgaggacc 41139700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 10354628 - 10354575
Alignment:
Q  193 aggggtcaattttgcaataatttggaaatttattggggtcaatttgaaaagtttg 247  Q
    |||||||||||| | ||| ||||||||||||||||||||||||| ||||| ||||    
T  10354628 aggggtcaattt-gtaattatttggaaatttattggggtcaattagaaaaatttg 10354575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 9449651 - 9449696
Alignment:
Q  217 gaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||| |||||||||||||| |||||||| | ||||||||    
T  9449651 gaaatttattgtggtcaatttgaaaattttggaaaatgtgaggacc 9449696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 40548042 - 40548091
Alignment:
Q  213 tttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    |||| ||||||||||||||||||||||||  |||||||| | ||||||||    
T  40548042 tttgaaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 40548091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 36397775 - 36397834
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  36397775 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 36397834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 30767571 - 30767522
Alignment:
Q  213 tttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    |||||||||||||||||||||| ||||||| |||||||| | ||||||||    
T  30767571 tttggaaatttattggggtcaaattgaaaattttggaaaatttgaggacc 30767522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 42005730 - 42005798
Alignment:
Q  193 aggggtcaattttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    |||||||||||| |||||  |||  ||||||||||||||||| ||||||| |||||||||| ||||||||    
T  42005730 aggggtcaattt-gcaattttttataaatttattggggtcaaattgaaaattttggaaagtttgaggacc 42005798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 7302662 - 7302618
Alignment:
Q  218 aaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||    
T  7302662 aaatttattggggtcaaattgaaaattttggaaagtttgaggacc 7302618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 37054665 - 37054621
Alignment:
Q  218 aaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||    
T  37054665 aaatttattggggtcaaattgaaaattttggaaagtttgaggacc 37054621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 30766824 - 30766781
Alignment:
Q  218 aaatttattggggtcaatttgaaaagtttggaaagtatgaggac 261  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||    
T  30766824 aaatttattggggtcaaattgaaaattttggaaagtttgaggac 30766781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 34088857 - 34088798
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  ||| |||||||||||||||||||||||||  |||||||| | ||||||||    
T  34088857 tttgcaatttttttgaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 34088798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 53470214 - 53470273
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||| ||| | ||||||||    
T  53470214 tttgcaattttttggaaatttattggggtcaatttgaaatttttgaaaaatttgaggacc 53470273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 31189192 - 31189230
Alignment:
Q  213 tttggaaatttattggggtcaatttgaaaagtttggaaa 251  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  31189192 tttggaaatttattgggatcaatttgaaaattttggaaa 31189230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 50168465 - 50168514
Alignment:
Q  192 taggggtcaattttgcaataatttggaaatttattggggtcaatttgaaaa 242  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||| ||||    
T  50168465 taggggtcaattt-gcaatattttgaaaatttattggggtcaattttaaaa 50168514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 24241989 - 24242033
Alignment:
Q  218 aaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||||||||| ||||||| |||||||| | ||||||||    
T  24241989 aaatttattggggtcaaattgaaaattttggaaaatttgaggacc 24242033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 33189053 - 33189112
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  33189053 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 33189112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 39630510 - 39630451
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||  |||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  39630510 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaaatttgaggacc 39630451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 7167469 - 7167513
Alignment:
Q  218 aaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||    
T  7167469 aaatttattggggtcaaattgaaaattttggaaagtttgaggacc 7167513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 30698552 - 30698509
Alignment:
Q  218 aaatttattggggtcaatttgaaaagtttggaaagtatgaggac 261  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||    
T  30698552 aaatttattggggtcaaattgaaaattttggaaagtttgaggac 30698509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 7227789 - 7227857
Alignment:
Q  193 aggggtcaattttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    |||||||||||| |||||  |||  ||||||||||||||||| ||||||| ||||| |||| ||||||||    
T  7227789 aggggtcaattt-gcaattttttataaatttattggggtcaaattgaaaattttggtaagtttgaggacc 7227857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 11141581 - 11141532
Alignment:
Q  213 tttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||||||||||||||||| |||  |||||||| | ||||||||    
T  11141581 tttggaaatttattggggtcaatttaaaatttttggaaaatttgaggacc 11141532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 11607009 - 11606941
Alignment:
Q  193 aggggtcaattttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||||  |||| |||| |||||||||||||||||| ||||||  |||||||| | ||||||||    
T  11607009 aggggtcaattta-caattatttagaaatttattggggtcaaattgaaatttttggaaaatttgaggacc 11606941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 29278825 - 29278870
Alignment:
Q  217 gaaatttattggggtcaatttgaaaagtttggaaagtatgaggacc 262  Q
    ||||||||||| |||||||||||||| |||||||| | ||||||||    
T  29278825 gaaatttattgaggtcaatttgaaaattttggaaaatgtgaggacc 29278870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 30265598 - 30265543
Alignment:
Q  191 ttaggggtcaattttgcaataatttggaaatttattggggtcaatttgaaaagtttg 247  Q
    |||||||||||||| |||||  ||||||||||||||| ||| |||||||||| ||||    
T  30265598 ttaggggtcaattt-gcaattttttggaaatttattgaggttaatttgaaaattttg 30265543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 19582 - 19620
Alignment:
Q  213 tttggaaatttattggggtcaatttgaaaagtttggaaa 251  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  19582 tttggaaatttattggggtcaaattgaaaagtttggaaa 19620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 4285 - 4333
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaa 251  Q
    ||||||||  |||||||||||||||||||||||||||||  ||||||||    
T  4285 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaa 4333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 4929 - 4977
Alignment:
Q  203 tttgcaataatttggaaatttattggggtcaatttgaaaagtttggaaa 251  Q
    ||||||||  |||||||||||||||||||||||||||||  ||||||||    
T  4929 tttgcaattttttggaaatttattggggtcaatttgaaatttttggaaa 4977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University